Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g02312 ATGGTACTTCAAGATATTAAGGGAGGAAGGATCCAAGCGTCAATCAATAAAGGTTTATTCAAGAAGTGGAGAGGTTTTTTTGAGGAGTTTAAAATGTACACTATGAGTAACTTCATAGTTGTGGACAAGATGGAGAAGATTAAAACAACAAGAAATCGGTGGACTTTGAACTTTTCCCACAGAACAGTTGTTGTTCGTGTGGAAAATCCAAGTTTTCCTCTCGAATCCTTTTGCTTGAAGCCTATCCCAGAGCTCCTTGCTGCCGAAAAGCTTGATGATTCTCAACTATTGGACATAATCTGGGAGGTTGTTGGGAAGGAGGACCCAAGAGATATAATCACAAGCAAAGGAAATGAGACAAAACGTATAGTGGTTGTGATAGCAGACCTAGAGGGTTTTGTGTTACGCAGTAACAACAATCTTGATTGTGTGTTGTTTGGTGACATGGTCGATCACATACTTCCCCATCTTGAAGATGGCAGGGTTGAACCACTAATAGTGGTGTTGCAGTTCTTTAAACCCAGTCGATGGAATGATAAGGTATCGGTTCAAAGCCACTTTGATGTCTCTAAAATACATGTTAATCCTGACATGAAGGAAGTCTCCGGTCATGGTGTGCAATTTGGTGCTGCAGAACTAAAACGAGGAGGTGTCATAGTGAAATCAATAGAGGATGCACTCAATTCAACAGAGGAAGGTCCTATATGGATTGGCGGAACCATTGTCTCTATCAATGCTGGCAACAACGATTGGTTTTACAAATCGTGTAGGAAGTGTCCAAAAAAAGTAGAAACCCCGATTGGAAATCGATATGAATGTTTCAAGTGTGGTCATACACATGGCAGTGCATCCCTTAGGTACAAGGTTGAAGTTATAGCCTATGATGGAACAGGAAGTATAACTATGCTAATGTGGGATAGAGAAACAACACAGCTTATAGGGAGGCAAGCTGAACAAATCAAGGATGAAGATTGTTTGGAAGGGGAAGGTTACCCCCCAACCCTTGATAACATGATGGACAAGAAGTTACTCTTTAAAATTAATGTCAAAACAGCCAACATCAACAAGCATGACCAGGTTTACACTATCATGAAGATATGTGACGATGAAGACATTATAGAAAAAAATTGCCCTATGGAATTCATCAGCAATCCTTCTGACTTCTTAACTGAGAATGAGATCAGCAATTCAATGGATGTTTCAGTTGCTGTGGCTAATCTCAAGTCTGATAATAATTCTCAGTGCTCTGTGGATGTTGTGGAGGATTCTGTCACAAGCCTCAAGTGCAAGACCCCAACTAGGAGAGCTCTTAGTGGAGTAAAACATGCAGTGTCATTGAACATTGACAATGAAAAATATTTCCAACTCTCCACTAACAAGTTAAGCCAAAAGAGTAGCCAGAAGAGGCAAAAGATGCAGACTGTTGAATGTGATAATTAA 1440 0.4021 MVLQDIKGGRIQASINKGLFKKWRGFFEEFKMYTMSNFIVVDKMEKIKTTRNRWTLNFSHRTVVVRVENPSFPLESFCLKPIPELLAAEKLDDSQLLDIIWEVVGKEDPRDIITSKGNETKRIVVVIADLEGFVLRSNNNLDCVLFGDMVDHILPHLEDGRVEPLIVVLQFFKPSRWNDKVSVQSHFDVSKIHVNPDMKEVSGHGVQFGAAELKRGGVIVKSIEDALNSTEEGPIWIGGTIVSINAGNNDWFYKSCRKCPKKVETPIGNRYECFKCGHTHGSASLRYKVEVIAYDGTGSITMLMWDRETTQLIGRQAEQIKDEDCLEGEGYPPTLDNMMDKKLLFKINVKTANINKHDQVYTIMKICDDEDIIEKNCPMEFISNPSDFLTENEISNSMDVSVAVANLKSDNNSQCSVDVVEDSVTSLKCKTPTRRALSGVKHAVSLNIDNEKYFQLSTNKLSQKSSQKRQKMQTVECDN 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g02312 479 CDD RPA1_DBD_C 220 366 IPR013955 -
Aip08g02312 479 Pfam Domain of unknown function DUF223 1 68 IPR003871 -
Aip08g02312 479 Pfam Replication factor-A C terminal domain 239 366 IPR013955 -
Aip08g02312 479 PANTHER BNAC07G49340D PROTEIN 4 431 - -
Aip08g02312 479 PANTHER REPLICATION FACTOR A 1, RFA1 4 431 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Aip08g02312 479 Gene3D - 71 204 IPR012340 -
Aip08g02312 479 SUPERFAMILY Nucleic acid-binding proteins 230 369 IPR012340 -
Aip08g02312 479 SUPERFAMILY Nucleic acid-binding proteins 80 201 IPR012340 -
Aip08g02312 479 Gene3D - 205 376 IPR012340 -
Aip08g02312 479 Gene3D - 1 69 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g02312 Aip-Chr8 98782452 98785010 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g02312 3 355 Core DNA Replication Machinery Family AT5G08020 23.037 3.43e-11 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g02312 - - aip:107635133 671.389