Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g02304 ATGGCGACGGCGACGGGGGCGGAGGAATCAGAACTCAATACCTATTGGTGCCACGAATGCGACATGAGCGTCGCCCTCTCCTCTTCCCGTTCTTCCCCTCTCATGTGTCCCCACTGCCGCACCCACTTCCTAGAACTCATGGACTCACCTTCCCAAAACGACGCCGTTGCACCACTCTCCTCTCTCTCCCTCTTTGATTCCCCCTTCTTTCACCGTCTAATCCACCACCACCTCGTTTCCAACTCCAATACCAACACCACCGACAGTCCAAACGACGACGTCGTTTTCGAGGACCCACTCTCTTTACTCTCCCCGTCCCTGATTTCCTCCAAAACAGCGTCGTCCAAGTCCTCCGCAACCGCCGTCCCCGTAATTCTTGTCACCTCCGCGTTGCTCTCCCAGCTCGATCCAAACGGTGTCGTTTCGTGCGCGGTGTGCAAGGACGACATTGAAATCGACGAGGAAGCAAAGCAGCTTCCGTGTAACCACCTTTACCACTCCGATTGCATCACGCCGTGGCTCGAACTCCACGATTCGTGCCCGCTCTGCCGGTTCCGACTTTCGGCGGCAGAGGAGGAGGCGGAAGGGGAGGAAGAGGACGGCCTCGATGGTGCTTTAACGTCGAGCGAGATCAGGAGTCAGCTGAGGGCGGCGATGGTGAGGCTTTCGGAGCTAATGGAGGAAGAGGAGGATGATTTCTACGGGTTGAGGACCACTCTGAATCACATTGCCTCAAGGCACGGCTTGATTGGCTCCAATGGTGCTTCTGTGGTGAGCGAGGAGGGTGAGGGTGGTGATTCGGAGAATTTTTCCAGAATCGGTGGTGGCAATGGCAGTGAATGA 843 0.5658 MATATGAEESELNTYWCHECDMSVALSSSRSSPLMCPHCRTHFLELMDSPSQNDAVAPLSSLSLFDSPFFHRLIHHHLVSNSNTNTTDSPNDDVVFEDPLSLLSPSLISSKTASSKSSATAVPVILVTSALLSQLDPNGVVSCAVCKDDIEIDEEAKQLPCNHLYHSDCITPWLELHDSCPLCRFRLSAAEEEAEGEEEDGLDGALTSSEIRSQLRAAMVRLSELMEEEEDDFYGLRTTLNHIASRHGLIGSNGASVVSEEGEGGDSENFSRIGGGNGSE 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g02304 280 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 133 201 IPR013083 -
Aip08g02304 280 Coils Coil 212 232 - -
Aip08g02304 280 Pfam zinc-ribbon 13 47 IPR039525 GO:0061630
Aip08g02304 280 SUPERFAMILY RING/U-box 142 188 - -
Aip08g02304 280 SMART ring_2 143 183 IPR001841 -
Aip08g02304 280 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RING1-LIKE 13 250 - -
Aip08g02304 280 ProSiteProfiles Zinc finger RING-type profile. 143 184 IPR001841 -
Aip08g02304 280 MobiDBLite consensus disorder prediction 254 280 - -
Aip08g02304 280 CDD RING-H2_RNF126_like 142 184 - -
Aip08g02304 280 Pfam Ring finger domain 142 184 IPR001841 -
Aip08g02304 280 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 13 250 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g02304 Aip-Chr8 98293781 98296677 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g02304 9 264 C3H Transcription Factor Family AT3G60080 34.219 6.52e-33 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g02304 K11982 - gmx:100775530 207.994