Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g02281 ATGATATATTGTGGGTCTTATGATACCTTAAGGACTTTGATACATTTGAAATGTGGTGGTGCTGATGGGATCACAAAACTGAGCAAAATGACAGAAGTTGTAGCAGAACTCGATTTGAATCAACAGCCTTTGCATGACATAGAAGAGCGAATTAGACGCCTAGAAGGCATAATTTTCGGAGTTAGGCAGCGGCAGAGGTGGTGCCGTAGTGATAGTCCTGTCCGAATGACTACATTCACCGGAGAAGTGTTGGTTGATGGGGTTCAAGATGAAGGCAGACCACAGCTGGAAGAGGTAGAGGCCGGAGATGATGTCAAAGAAAATGGTAATGTGGAAAGCAGCAGTTGTAGGGGCAAAAGGAAGGCATCTGCATATTTGGTTGCTAAGGCGCTGGGGATGGAAACTAACACTGATAAGGCAAAGGGACGCGCAGGAAACTACTTCGATTGTAACATATGCTTGAAAATGGCAAGAGATCCTGTTTTGACTTGCTGTGGTCACTTGTTCTGCTGGCCCTGCTTCTTTCGCTTGTCGTATGCTTATGCAAATGCTAGGGAATGCCCTGTATGTGAAGGAGAGGTCATGATCACATGCATTACTCCAATTTATGGATCTGTAGGAGTCAATGACAGTGATCAGCTAGAATCAGAAGAGAATGGTTGTGAAATTCCTGCTCGACCTTGTGCGCGCAGAGTTAAGGTTAGCAAGGTGAAGTGTTTCAGAAACCGTGGTTTTCCATTAAATAATCCCCGTACTTCAGCTCAAAGTTCAAGTACAGTAATCCAAGGAATCGCCTTACTTTCACCGCCAATCACTCCGCCGCAAAGACCTTTAGAGGGACTTGATTCCTACCTTGGAAGTGACTCTGAAGGAAGCACCTTGCAGCTGAATCATAATGCTGCTTCGAACCATTCAGAGTCACATAATCAAAATGTTATTGCTGCAGCCGCCACATCTTCTGTTACTCCTTTGACTATGAATGATGATGCTATTGCTATTACAGATTCCAGTACACAAATCACCAATAGTAGTGGACAGATTATTTCTTCCGACCATTCATCGTCTAGTCGAATTGATGTAGTTTTAAGATGA 1092 0.4386 MIYCGSYDTLRTLIHLKCGGADGITKLSKMTEVVAELDLNQQPLHDIEERIRRLEGIIFGVRQRQRWCRSDSPVRMTTFTGEVLVDGVQDEGRPQLEEVEAGDDVKENGNVESSSCRGKRKASAYLVAKALGMETNTDKAKGRAGNYFDCNICLKMARDPVLTCCGHLFCWPCFFRLSYAYANARECPVCEGEVMITCITPIYGSVGVNDSDQLESEENGCEIPARPCARRVKVSKVKCFRNRGFPLNNPRTSAQSSSTVIQGIALLSPPITPPQRPLEGLDSYLGSDSEGSTLQLNHNAASNHSESHNQNVIAAAATSSVTPLTMNDDAIAITDSSTQITNSSGQIISSDHSSSSRIDVVLR 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g02281 363 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 38 301 IPR045103 GO:0005783|GO:0006511|GO:0061630
Aip08g02281 363 SUPERFAMILY RING/U-box 146 196 - -
Aip08g02281 363 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 38 301 - -
Aip08g02281 363 MobiDBLite consensus disorder prediction 341 363 - -
Aip08g02281 363 CDD RING-HC_AtRMA_like 148 192 - -
Aip08g02281 363 ProSiteProfiles Zinc finger RING-type profile. 150 191 IPR001841 -
Aip08g02281 363 SMART ring_2 150 190 IPR001841 -
Aip08g02281 363 MobiDBLite consensus disorder prediction 341 357 - -
Aip08g02281 363 Pfam zinc-RING finger domain 150 191 IPR001841 -
Aip08g02281 363 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 125 260 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g02281 Aip-Chr8 97382057 97384046 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g02281 107 233 C3H Transcription Factor Family AT3G58030 42.520 3.36e-28 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g02281 K10666 - gmx:100778919 186.037