Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Aip08g02270 | ATGTCTAGTCTTGCAAACTTCATGCTTTGGGTGGCAGTGTTGAAAGAATTTCAGAAGGCACAGCGTCCTGCAGCAGAGAAGGAAACTTCTTACACCCCATTTGTTCCACAAGCTGCTCCATCCAGCTATACAGCTAATGAAGCAGATGCTAATTCTGGTAAGACACCAGAACAACGTGCCCTTGTTGTGGAATCCAGAAGGCAGGAGGTCTTGTTTTTAGATAATGAGATTGCTTTCAACGAGGCTATCATTGAAGAAAGAGAGCATGGCATTCAAGCAATTCAGCAGCAAATTGGTAAAGTAAATGAAATTTTTAAAGACCTTGCTGTGCTTGTACTTGTGCATGAACAAGGAACTATGATTGGTTAG | 369 | 0.4201 | MSSLANFMLWVAVLKEFQKAQRPAAEKETSYTPFVPQAAPSSYTANEADANSGKTPEQRALVVESRRQEVLFLDNEIAFNEAIIEEREHGIQAIQQQIGKVNEIFKDLAVLVLVHEQGTMIG | 122 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Aip08g02270 | 122 | CDD | SNARE_Qa | 84 | 121 | - | - | |
| Aip08g02270 | 122 | PANTHER | SYNTAXIN | 11 | 121 | IPR045242 | - | |
| Aip08g02270 | 122 | SUPERFAMILY | t-snare proteins | 12 | 117 | IPR010989 | GO:0016020|GO:0016192 | |
| Aip08g02270 | 122 | MobiDBLite | consensus disorder prediction | 23 | 58 | - | - | |
| Aip08g02270 | 122 | Gene3D | - | 8 | 122 | - | - | |
| Aip08g02270 | 122 | PANTHER | SYNTAXIN OF PLANTS PROTEIN | 11 | 121 | - | - | |
| Aip08g02270 | 122 | MobiDBLite | consensus disorder prediction | 34 | 53 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Aip08g02270 | Aip-Chr8 | 95750313 | 95751761 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Aip08g02270 | 10 | 121 | SNARE and Associated Proteins | AT5G46860 | 71.681 | 8.84e-49 | 155 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Aip08g02270 | - | K08488 | aip:110265335 | 185.267 |