LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aip08g02244	ATGACTATACCATCGGCACCGCCGCCCTTTGCCCTAACTGTGCTCTGCGCCGGCTGCAGCACGCCACTGACCACGTCGATGAACGTCGTGGAGTTTGTTTGCCCTGCTTGCCAAATGCCGCAGCGGTTGCCGCCGATGCCATTACCACCACTTCCACCACCATCAGTATCACCGCCACAATCGCAACCACCAGTGCCGCCGGCTGGAGCGGCTGCGAAGAAGCGGAAACACGCCACGGAGACTAGCAAGCTACGCAAGAAGCAGAATGGCGGCTCTGGTTCAAGTAAGGTTGAGCTAGCGGTTGAGGTTGAACGTGATGAAGATGAAGGCGGAACAGCAGGAGAAACATTTACAGATTATCGGCCAGCAAAAGTATCTATGGGACCTCCGCACCCAGATCCTGTTGTTGAGACTTCTTCCTTGTCTGCAGTGCAGCCACCTGAACCTACTTATGATCCAATACTTAAAGATTATTTGGAAAGTTCAAAGGCTTTGTCATGCCTGCAGATAGAGACATTGGTCTATGCTTGTCAGAGGCATCTTCTACACCTTCCAGACGGCACAAGGGCAGGATTTTTTATTGGGGATGGAGCTGGTGTTGGTAAGGGCCGCTCAGTTGCTGGGCTTATTTGGGAGAACTGGCAGCAAGGACGGGAAAAGGCGTTATGGATTTCTGTTGGTTCAGACTTGAAGTTTGATGCCAGAAGAGACTTGGATGATATGGGTGCAACTTGTGTTAAAGTGCATGCTTTGAACAAACTGCCTTATTCTAAGCTTTCTTCGAAGTCTGTTGGAGTCAAGGATGGGGTTGTTTTCTCAACTTACAGTAGCCTCATAGCATCCTCTGATAAGGGTCAATCTCGTCTCAAACAACTTGTGCAGTGGTGTGGGCCAAAGTTTGATGGTCTTATAATATTCGATGAGTGTCACAAAGCGAAAAACTTGATGCCGGAAGCTAAAGGTGGTATGCAGCCAACACAAACTGGCAAAGCAGTGCTTGATATACAGGCTCAACTACCCGAAGCTCGTGTTGTTTATTGTTCTGCCACTGGTGCATCTGAACCCCGCAACATGGCTTATATGGTTCGACTTGGCCTTTGGGGTGATGGAACTTCTTTCTGTGATTTCAAGGAATTTTTAGGTGCACTTGACAAAGGGGGTGTAGGAGCTCTAGAACTAGTTGCCATGGACATGAAAGCAAGGGGAATGTATTTATGTCGGACCCTTAGCTACAAGGGTGCTGACTTTGAAGTTATTGAAGCACCATTAGAGGATAAGATGATGGACATATATGAAAAAGCTGCAAAATTTTGGTCGGAACTGCGCGTGGATTTACTGTCTACAACTTCCAATGCCTTCTTAAATGTGAAATTTGATTCACGTACACTGTGGAGATTATACTGGTCATGCCACCAGCGTTTCTTTAGACACGTGTGTTTGTCTGCTAAAGTACCTGCTACTGTGAGACTAGTGAAGCAAGCATTGATGGAAGATAAGTGTGTAGTTATAGGACTGCAGAGTACTGGGGAAGCCAGGACTGAAGGAGCTGTGGCAAAATACGGTTTTGAACTTGATGATTTCATTTCTGGGCCTCAAGAGTTGCTGGAAAAATTTGTAGATGACTGTTTTCCATTGCCAGAGAACCCCGAACTTCATGAAAAGGATGCATTGCTTGATCTCGAGGGGATGGGGCACTCAACGAGTCCTTGTGTATCAGGAAAAGTAAAGGGCAGGAACATAGCTAAGGTGCATCCTTCTAGTAATATTGAAAGTTACGAAGAATCTGAAACTGCCTCTGCTCTTGAATCTAGTGACTCTGATTATGATGAGCTTCAGACATGTGAATTATGCAGCTTAGAGGAGGAAAGGCATAATTTGCTTTCATGCTCTGGCTGTGGTAAACTGGTCCATCAAGAATGCTTAAGTCCCCCAATTCACAATTTAACTCCAGAAAAATGGTTATGCACTGTGTGCAAAGGAAGAACAAATGACATCCAACCAGGTCCTGGCTACCTAACTGAACTCAAGAAGAGGTTTGGCACATGTTTTAACGAATTCTGCAACTGTGGTTTTAATGGTATTTGTTTAGGAGGCACTGAAAAAGTTGCTGAAATCACAGGAAGAAAAGGCAGGCTTGTGAGGGCCCCTTCGGGAAAGGGTGTAATTTACGAGCCTCGTAACAAAAAAGATATCAGTATGGAGATGGTAAACATGCATGAAAAGAAGCTTTTTCTGGATGCTAAGAAGTTTGTTGCTATTATATCTGAAGCCGGATCTGCGGGTTTTTCATTGCATGCAGATAGAAGGGTTATTAATCAGAAAAGAAGGGTTCATATAACTTTAGAACTTCCTTGGAGTGCTGACAAAGCAATTCAGCAGTTTGGAAGAACTCATCGATCAAATCAAGCTTCAGCTCCAGAATACAGGGTGCTCTTTAGTAACCTTGGTGGTGAACGAAGCTTTGCATCTGTTGTTGCTAAAAGATTAGAATCTCTTGGTGCTTTGACTCAGGGGGATCGCAGGGCTGGACCTTCATTAAGTGCTTACAATTATGATAGTAGTTATGGAAAGAGGGCTCTAATGATTATGTACGAAGGAATATTGGAACAGGATTCTCTTCCTGTTGTTCCTCCTGGATGTTTATCTGACAATCCTGTTACAATCAATGAATTTATTATGGAAGCAAAAGCTGCTCTTCTATCTGTTGGAATAGTTAAAGGATATGAGGAACATTCTGGAAGTTTATCTGGCTACATTAGTGATAATGATATGCAAGATGTTCGGCGATTCCTCAATCGGCTTCTAGGACTTCCTCCTGATATTCAGAATAGGCTTTTTGAATTATTTGCGAGCATATTTGATCATCTCATTCAGAATGCTCGCATTGAAGGTAACCTTGATACAGGCATTGTGGATATGAAGGCTAATGTTGTAGAACTACAAGGGACTCCAAAGACAGTTTATATTGATCCAGTGATGGGGGCTTCAACGGTTCTGTTCACTTTCATCTTGGATAGGGGGACCACATGGCAGCTGGCAACCTCCATGCTGAATGAGAAGCAGAAGGGTGGGCTTGGATCAGTCAATGATGGTTTCTACGAGTCTAAGAGGGAGTGGTTAGGAAGGCGTCATTTCATTTTAGCATTTGAAAGTTCTGTTTCGAATATGTATAAGATAGTTCGCCCTACTGTTGGAGAATCCTTTCGGGACATGCATCTGTCAGAATTAAAAAGGAAATATAAAAAAGTTTCATGTTTAAAGAATGCTCAAAAAGGATGGGAAGTGGAATATAATGTTTCATCTAAACAGTGCATGCACGGTCCCAAATGTAAGCTTGGCAACTTCTGTACTGTTGGCCGAAGTCGGCAGGAAGTAAATATCTTGGGTGGTGCTATTCTTCCTCTTTGGCGAGCTATTGAGAAGGCCCTTTCTTTGCAGTTTCGCCGAAACCATAGGAGGCTACGTGTTGTTCGCATTGAGACTTCTGCTGATAACCAGCATATAGTTGGCGTTCTTGTTCCTAATGCAGCTGTTAAATCCGTCCTTCAAGGTTTGGAATGGGTTCCAGCTGATGATAATTGA	3582	0.4408	MTIPSAPPPFALTVLCAGCSTPLTTSMNVVEFVCPACQMPQRLPPMPLPPLPPPSVSPPQSQPPVPPAGAAAKKRKHATETSKLRKKQNGGSGSSKVELAVEVERDEDEGGTAGETFTDYRPAKVSMGPPHPDPVVETSSLSAVQPPEPTYDPILKDYLESSKALSCLQIETLVYACQRHLLHLPDGTRAGFFIGDGAGVGKGRSVAGLIWENWQQGREKALWISVGSDLKFDARRDLDDMGATCVKVHALNKLPYSKLSSKSVGVKDGVVFSTYSSLIASSDKGQSRLKQLVQWCGPKFDGLIIFDECHKAKNLMPEAKGGMQPTQTGKAVLDIQAQLPEARVVYCSATGASEPRNMAYMVRLGLWGDGTSFCDFKEFLGALDKGGVGALELVAMDMKARGMYLCRTLSYKGADFEVIEAPLEDKMMDIYEKAAKFWSELRVDLLSTTSNAFLNVKFDSRTLWRLYWSCHQRFFRHVCLSAKVPATVRLVKQALMEDKCVVIGLQSTGEARTEGAVAKYGFELDDFISGPQELLEKFVDDCFPLPENPELHEKDALLDLEGMGHSTSPCVSGKVKGRNIAKVHPSSNIESYEESETASALESSDSDYDELQTCELCSLEEERHNLLSCSGCGKLVHQECLSPPIHNLTPEKWLCTVCKGRTNDIQPGPGYLTELKKRFGTCFNEFCNCGFNGICLGGTEKVAEITGRKGRLVRAPSGKGVIYEPRNKKDISMEMVNMHEKKLFLDAKKFVAIISEAGSAGFSLHADRRVINQKRRVHITLELPWSADKAIQQFGRTHRSNQASAPEYRVLFSNLGGERSFASVVAKRLESLGALTQGDRRAGPSLSAYNYDSSYGKRALMIMYEGILEQDSLPVVPPGCLSDNPVTINEFIMEAKAALLSVGIVKGYEEHSGSLSGYISDNDMQDVRRFLNRLLGLPPDIQNRLFELFASIFDHLIQNARIEGNLDTGIVDMKANVVELQGTPKTVYIDPVMGASTVLFTFILDRGTTWQLATSMLNEKQKGGLGSVNDGFYESKREWLGRRHFILAFESSVSNMYKIVRPTVGESFRDMHLSELKRKYKKVSCLKNAQKGWEVEYNVSSKQCMHGPKCKLGNFCTVGRSRQEVNILGGAILPLWRAIEKALSLQFRRNHRRLRVVRIETSADNQHIVGVLVPNAAVKSVLQGLEWVPADDN	1193

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aip08g02244	1193	Pfam	C-terminal domain on Strawberry notch homologue	696	972	IPR026937	-
	Aip08g02244	1193	Pfam	P-loop containing NTP hydrolase pore-1	130	432	IPR039187	-
	Aip08g02244	1193	Gene3D	-	159	363	IPR027417	-
	Aip08g02244	1193	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	576	664	IPR013083	-
	Aip08g02244	1193	MobiDBLite	consensus disorder prediction	48	148	-	-
	Aip08g02244	1193	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	143	375	IPR027417	-
	Aip08g02244	1193	SUPERFAMILY	FYVE/PHD zinc finger	602	661	IPR011011	-
	Aip08g02244	1193	PANTHER	OS08G0223700 PROTEIN	9	61	-	-
	Aip08g02244	1193	PANTHER	OS08G0223700 PROTEIN	106	1189	-	-
	Aip08g02244	1193	PANTHER	STRAWBERRY NOTCH-RELATED	9	61	IPR026741	GO:0006355
	Aip08g02244	1193	PANTHER	STRAWBERRY NOTCH-RELATED	106	1189	IPR026741	GO:0006355
	Aip08g02244	1193	SMART	PHD_3	613	659	IPR001965	-
	Aip08g02244	1193	MobiDBLite	consensus disorder prediction	48	66	-	-
	Aip08g02244	1193	ProSitePatterns	Zinc finger PHD-type signature.	614	658	IPR019786	-
	Aip08g02244	1193	MobiDBLite	consensus disorder prediction	99	114	-	-
	Aip08g02244	1193	Pfam	PHD-finger	614	659	IPR019787	-
	Aip08g02244	1193	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	743	847	IPR027417	-
	Aip08g02244	1193	ProSiteProfiles	Zinc finger PHD-type profile.	611	661	IPR019787	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aip08g02244	Aip-Chr8	94195380	94214054	Dispersed

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	PHD	Aip08g02244		AAA_34	2.7e-131	CL0023

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aip08g02244	-		-	ahf:112702977	2181.76