Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g02236 ATGGCTCCAATGAGTCTCCCACCTGGTTTTAGGTTTCACCCCACAGATGAAGAGCTCGTTGCTTACTACTTAGAAAGGAAGATAACAGGTCGCTCTATAGAGCTTGACATTATAGCTGAAGTTGATTTATACAAATGTGAACCATGGGATTTGCCAGATAAGTCATTTCTACCAAGCAAGGATATGGAGTGGTATTTCTACAGTCCAAGGGATAGGAAGTATCCAAATGGATCAAGAACGAACAGGGCAACAAGAGGTGGGTACTGGAAAGCGACTGGAAAGGACAGGGCAGTGCAGTCTCAGAAGAAGGCAGTTGGTATGAAGAAGACTTTGGTGTATTACAAAGGAAGAGCTCCACATGGAATTAGAACCAACTGGGTCATGCATGAGTACCGCTTGATTGAATCCCTCCCTGGTACTCCTCACTCCTCTTTCAAGGATTCCTTTTCATTGTGTCGGATTTTCAAAAAGACAATTCAAGTTCAAGACAAATCTAAAGAAGAGAAAGAACATCAAGCATTACTAGAGGAAGATCACTCAAGTGGCATTGAGATTTCAAGAGAAATGGAAGCCATGAATGATAATAATAACAATAATATAACTCTAAATAGTAATGAACAATATCCTAATAATAATAATAATAAACTCCCTAATTGTGATGCTTCATCTTCTGATCTCACTCAAGGAACATGTACACCCACAGAAACCGGTATAGCAGATGATTTTCATGCCCAATTTGCTTGTGATGAAGCAAACAGTAGTGCCGCTAATTCTTACTCAATGGGAATAGCATACCCCTCAAACGTTTTTCAGGACATAGAGATGTCTATGTATGGAAGCATGCATAATTATCAATTCCCACAAACGCCTTTGGTGATGGAAGATTTTCCACAAATAGATTTTGCTGAGACAAAGTTATTGAAGCCAGAGGTGACTGAAGATTGCATGTTCTATGATAGATACGGTAGGGATTGTATGAATGGAACACTAGAAGAAATCATCTCATATTCATTTGACACAGAAGAAACTATAGCTACTTGTGTTGGCCAAAATAACCACACACAAAAGGAGACATTTTTTCTAGCAAGAGAGAAGCAGCAGCTACATATATAA 1113 0.3908 MAPMSLPPGFRFHPTDEELVAYYLERKITGRSIELDIIAEVDLYKCEPWDLPDKSFLPSKDMEWYFYSPRDRKYPNGSRTNRATRGGYWKATGKDRAVQSQKKAVGMKKTLVYYKGRAPHGIRTNWVMHEYRLIESLPGTPHSSFKDSFSLCRIFKKTIQVQDKSKEEKEHQALLEEDHSSGIEISREMEAMNDNNNNNITLNSNEQYPNNNNNKLPNCDASSSDLTQGTCTPTETGIADDFHAQFACDEANSSAANSYSMGIAYPSNVFQDIEMSMYGSMHNYQFPQTPLVMEDFPQIDFAETKLLKPEVTEDCMFYDRYGRDCMNGTLEEIISYSFDTEETIATCVGQNNHTQKETFFLAREKQQLHI 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g02236 370 MobiDBLite consensus disorder prediction 194 228 - -
Aip08g02236 370 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 1 307 - -
Aip08g02236 370 Pfam No apical meristem (NAM) protein 7 133 IPR003441 GO:0003677|GO:0006355
Aip08g02236 370 Gene3D NAC domain 15 161 IPR036093 GO:0003677|GO:0006355
Aip08g02236 370 SUPERFAMILY NAC domain 3 157 IPR036093 GO:0003677|GO:0006355
Aip08g02236 370 PANTHER NAC DOMAIN-CONTAINING PROTEIN 86-LIKE 1 307 - -
Aip08g02236 370 ProSiteProfiles NAC domain profile. 6 157 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g02236 Aip-Chr8 93314797 93318974 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g02236 1 337 NAC Transcription Factor Family AT1G54330 51.479 7.77e-100 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Aip08g02236 NAM 4.7e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g02236 - - aip:107611200 740.725
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g02236 08 93314797 93318974 Aip08g02236 08 93314797 93318974 ECH