Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g02227 ATGGGGCATCGTTGCTGCACCAAACAGAAGATCAAAAGAGGGTTGTGGTCTCCTGAAGAAGATGAGAAGCTTCTCAGATATATCACAACTCATGGCCACAAAAGTTGGAATAATATGGGGGCTGTGTGTGTGATTTTTCTATTTTTTGGGGCAGGATTGCAAAGATGCGGAAAGAGTTGCAGATTGAGATGGATAAATTACCTGAGGCCAGATCTGAAGAGGGGCTCCTTCACTTTAGAGGAAGAGCAGATCATAATTGACATTCATAGAATTCTCGGAAACAGATGGGCTCAAATAGCGAAGCACCTACCTGGTAGAACAGACAATGAGGTCAAGAATTTCTGGAACTCTTGCATTAAAAAGAAGCTCATATCTCAAGGCCTAGATCCACAAACACACACTCTTCTCTCTTCTCACAGGAGAACAACCTCATCATCATCAAACTTCTCTAACAATAATAATGATTCCTTTCTCATTATTACTTCAAATATGCCAAACAGTGCTAATAATAATGCTCCCATTATTGAAACTAGCCAAGGCCTTTCTTCTTCTTCTTCTTCACTACCTACCAATAATCAGGCTCAACCAAGTGTTGTTCAAGCACCGTCTAGCATTGTTACCTCATCGGATTTTTATTATGAACCATCAATAATAATAGAGAATAATAATAGTACTAATAGTAATGTCTCCAATAGTATCCCATCTAAGAATAGCTTATTATGGAGTTCAAGGACTGATCATGATGCTGAAGATTTCAGAGTTCAGACATTGGAAGAAGGGCAAGGAATGCAACATTCACTACATGCTGCTGATGATGATGATAACGAGATCAGAGAAGCTAATAATATCATTGAGATGAATACTAATGCTTCTTTGGAGGGCTCCAATAATGATAATAATAATAATAATTTTGACTTTGGGTTGCTGGAAAGTGTACTTAACTCTGAATTCATACTCTGTTGCTCATCCCCAACTCAGATAGGGCTCATCATCGGCGCTTGCACTCTCTCCTCTGCCGGCACTCCCTCCGTCGTCTCCCCTAATCTGTTTCTACTAGAGCTCGCATTCCCTGCGCACACTACTCATGGTGTCGTCAATGCACGTTTTGACTGTGCCGTCACCGCCGCTAGAAGAGCACTCAACCGCAACAAAGGCAACGAATGGCCTTCTGCTTCCAGCGCTCACCGAGCCCGCTATCTCTGCGCCATCGCTGCCAAGATCGTCGAGAGAAAGGATCACCTCGCTAAGCTTGAATCCCTTGATTGCGGAAAACCATTCGATGAAGCTGCCTGGGACATGGATGATGTTGCTGGTTGCTTCGAGTTTTACCCTGACCTTGCCGAGAAACTCGACGCTAAGCAGAAGGCACCCGTTTCTCTTCCCATGGAAACTTTCAAGAGTTATGTCCTCAAAGAACCCATTGTTGGAGGAGAAACTTTAGGATTGTCATTTGGGAATCTCGTAGTTGGAGGAGGAACTTTAGGATTTGTTAATTATCTGCTTCTTTACCTCTTGGGAGAGAGTCAACCTAATGGAAACAGTCATAAATCAACTAATCCATTTGATTTTATTGATGATGCTGATGTATCAGATGTAGAGCACGGTAATATGTTTCTTGATCTTAGCTCATTGCAAGCTGCTCTGCCCGATGCACAATTACAACCCACTTTCCATAGTGGTATTGCCGAACCATGGCTTCCTCAAAATTCAGTTAACTCCTACATCTCCTCTGCTGGACAAGGTGGTGATTTGACATTCTTGGATGTTCAACCACCAAGTTCTCAAATATCATAA 1794 0.4242 MGHRCCTKQKIKRGLWSPEEDEKLLRYITTHGHKSWNNMGAVCVIFLFFGAGLQRCGKSCRLRWINYLRPDLKRGSFTLEEEQIIIDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKKKLISQGLDPQTHTLLSSHRRTTSSSSNFSNNNNDSFLIITSNMPNSANNNAPIIETSQGLSSSSSSLPTNNQAQPSVVQAPSSIVTSSDFYYEPSIIIENNNSTNSNVSNSIPSKNSLLWSSRTDHDAEDFRVQTLEEGQGMQHSLHAADDDDNEIREANNIIEMNTNASLEGSNNDNNNNNFDFGLLESVLNSEFILCCSSPTQIGLIIGACTLSSAGTPSVVSPNLFLLELAFPAHTTHGVVNARFDCAVTAARRALNRNKGNEWPSASSAHRARYLCAIAAKIVERKDHLAKLESLDCGKPFDEAAWDMDDVAGCFEFYPDLAEKLDAKQKAPVSLPMETFKSYVLKEPIVGGETLGLSFGNLVVGGGTLGFVNYLLLYLLGESQPNGNSHKSTNPFDFIDDADVSDVEHGNMFLDLSSLQAALPDAQLQPTFHSGIAEPWLPQNSVNSYISSAGQGGDLTFLDVQPPSSQIS 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g02227 597 Gene3D - 76 123 - -
Aip08g02227 597 Pfam Myb-like DNA-binding domain 13 68 IPR001005 -
Aip08g02227 597 Pfam Myb-like DNA-binding domain 74 117 IPR001005 -
Aip08g02227 597 CDD SANT 76 116 IPR001005 -
Aip08g02227 597 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 69 123 IPR017930 -
Aip08g02227 597 ProSiteProfiles Myb-like domain profile. 8 68 IPR001005 -
Aip08g02227 597 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 68 IPR017930 -
Aip08g02227 597 PANTHER BNAC05G40480D PROTEIN 1 320 - -
Aip08g02227 597 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 357 481 IPR016162 GO:0016491
Aip08g02227 597 SMART sant 73 121 IPR001005 -
Aip08g02227 597 SMART sant 12 70 IPR001005 -
Aip08g02227 597 SUPERFAMILY ALDH-like 368 474 IPR016161 GO:0016491
Aip08g02227 597 PANTHER MYB DOMAIN PROTEIN 55 1 320 - -
Aip08g02227 597 ProSiteProfiles Myb-like domain profile. 69 119 IPR001005 -
Aip08g02227 597 MobiDBLite consensus disorder prediction 170 201 - -
Aip08g02227 597 CDD SANT 16 68 IPR001005 -
Aip08g02227 597 Pfam Aldehyde dehydrogenase family 367 474 IPR015590 GO:0016491
Aip08g02227 597 SUPERFAMILY Homeodomain-like 10 115 IPR009057 -
Aip08g02227 597 Gene3D - 5 73 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g02227 Aip-Chr8 92887733 92895285 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g02227 1 141 MYB Transcription Factor Family AT3G12720 79.433 1.64e-79 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aip08g02227 Aldedh 9.2e-14 CL0099
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g02227 K09422 - aip:110265331 320.857
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g02227 08 92887733 92895285 Aip08g02227 08 92887733 92895285 ECH