Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g02215 atggaaagaaTGTTCCCTCCAAAGAAGCCCTCAACTATGAATTCCCATGACAGACCCATGTGTGTTCAAGGCGACTCGGGTCTCGTTCTCACCACTGACCCCAAACCTCGCCTCCGTTGGACCGTTGAACTCCATGAACGTTTCGTTGATGCTGTTACTCAGCTTGGTGGCCCTGACAAGGCGACTCCTAAAACCATCATGAGGGTTATGGGTGTGAAGGGTCTCACACTTTACCACCTCAAGAGCCACCTTCAGAAATTTAGGCTCGGTAAGCAGCCCCACAAGGAATTCAACGATCACTCGATTAAGGATGGTATGAGAGGTGACTCACTCGATCTTCTTTCTAGGGTTCTTCCATTTTATTTATTTATTTATTTATTTATTTTTTTTTTTTTGATGCAAATAGAGGTGCAGCGAAGACTCCATGAACAACTTGAGGTGCAAAAACATCTTCAGCTAAGGATTGAGGCACAAGGAAAATACATGCAAAGCATATTGGAAAAGGCGTATCAAACCCTGGCAACTGAGAACATGGGGGCGGTGGCGGCAGCGGCAACGAACATGAAGGGGATTGGAGGAGGAGCCCATGGAATCCCTGACATGGGTGTCATGAAGGACTATGGTTCCCCTCTAAACTTCACATCTTTCCAAGACCTTGACATCTACGGCGGCGGAGGCGGAAATGACCAAATTGACCTTCACCAGAACCTGGAGAAGCCAACCCTTGACGGTAGTGGATTCCTTCCAATCAATGAGGGTCTTTGCCTTGGTGGGAGCAATAACAGTAGTAATAACAAGAAGAGGCCAAACCCTTATGGTAGTGGCAACAACACTGGGAAAAGCCCTTTGATTTGGAGTGACGATCTTAGGCTTCAAGATTTGGGAACAGCTTCTTCATGCCTTGGTGATGATTCTTTGTTCAAAGGTGAACAAATCCAGATGGATCATAGAGGAACTCATGAGATTGATCCAATGGCTGAGATCTATGACACAAAGCCTGTTCTTCAAGGTGCTGACGGAGATAACAAGAAATTTGATGCTTCTATGAAGCTTGAAAGGCCTTCACCGAGAAGGATGAGTCCTATGATCAGCACTGGAACCATGGCACAAGGTAGAAGCTCACCATTTGGATGA 1134 0.4586 MERMFPPKKPSTMNSHDRPMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDHSIKDGMRGDSLDLLSRVLPFYLFIYLFIFFFLMQIEVQRRLHEQLEVQKHLQLRIEAQGKYMQSILEKAYQTLATENMGAVAAAATNMKGIGGGAHGIPDMGVMKDYGSPLNFTSFQDLDIYGGGGGNDQIDLHQNLEKPTLDGSGFLPINEGLCLGGSNNSSNNKKRPNPYGSGNNTGKSPLIWSDDLRLQDLGTASSCLGDDSLFKGEQIQMDHRGTHEIDPMAEIYDTKPVLQGADGDNKKFDASMKLERPSPRRMSPMISTGTMAQGRSSPFG 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g02215 377 MobiDBLite consensus disorder prediction 258 282 - -
Aip08g02215 377 MobiDBLite consensus disorder prediction 352 377 - -
Aip08g02215 377 MobiDBLite consensus disorder prediction 1 20 - -
Aip08g02215 377 Pfam Myb-like DNA-binding domain 38 86 IPR001005 -
Aip08g02215 377 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 35 90 IPR006447 GO:0003677
Aip08g02215 377 Pfam MYB-CC type transfactor, LHEQLE motif 133 172 IPR025756 -
Aip08g02215 377 MobiDBLite consensus disorder prediction 360 377 - -
Aip08g02215 377 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 4 334 IPR044848 GO:0003700
Aip08g02215 377 SUPERFAMILY Homeodomain-like 34 90 IPR009057 -
Aip08g02215 377 PANTHER MYB FAMILY TRANSCRIPTION FACTOR APL 4 334 - -
Aip08g02215 377 Gene3D - 34 92 - -
Aip08g02215 377 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 32 92 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g02215 Aip-Chr8 91302284 91304457 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g02215 4 377 G2-like Transcription Factor Family AT1G79430 54.068 5.94e-112 329
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Aip08g02215 Myb_DNA-binding 2.1e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g02215 - - ccaj:109805894 506.138