Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g02159 ATGGCTTATTCTTCTCACTACCCGACTGCTCCTATGATGGCATCTGGTACACCTGCTGTAGTTGTGCCTTCACCAACGCAGTCTCCAACCGCTTTTTCCAATTCCCCTCACCAACTTGCATACCAGCAAGCGCAACACTTCCATCACCAGCAACAGCAGCAACAGCAGCAGCAGCTTCAACTATTCTGGGCAAACCAAATGCAAGAAATTGAGCAAACAATTGACTTTAAGAACCACAGCCTCCCCCTTGCTCGCATTAAAAAGATCATGAAAGCCGATGAAGATGTCCGGATGATTTCAGCAGAAGCCCCAGTAATATTTGCAAAAGCATGTGAAATGTTCATTCTGGAGTTGACTTTGCGATCTTGGATCCACACCGAAGAGAACAAGAGGAGAACTCTGCAAAAGAATGATATAGCAGCTGCTATTTCGAGAAATGATGTTTTTGATTTCTTGGTTGATATCATTCCAAGAGATGAGTTGAAAGAGGAGGGACTCGGAATAGCAAAGGCTACTATTCCAATAGTGGGTTCTCCGGCTGATATGCCATATTATTATGTCTCTCCGCAGCACCCTGTAGGGCCTCCAGGGATGATAATGGGAAAGCCAGTTGATCAAGCAGCACTGTATTCTACACAGCAGCCTCGAGCTCCAATGGCGTTCATGCCATGGCCGCAGGCGCCCTCGCAACAGCAGCCACCCCAACAGGAACAAACAGACTCTTGA 726 0.4711 MAYSSHYPTAPMMASGTPAVVVPSPTQSPTAFSNSPHQLAYQQAQHFHHQQQQQQQQQLQLFWANQMQEIEQTIDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRNDVFDFLVDIIPRDELKEEGLGIAKATIPIVGSPADMPYYYVSPQHPVGPPGMIMGKPVDQAALYSTQQPRAPMAFMPWPQAPSQQQPPQQEQTDS 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g02159 241 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 5 235 - -
Aip08g02159 241 MobiDBLite consensus disorder prediction 219 241 - -
Aip08g02159 241 Pfam Core histone H2A/H2B/H3/H4 34 143 IPR007125 GO:0003677
Aip08g02159 241 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-9 5 235 - -
Aip08g02159 241 SUPERFAMILY Histone-fold 37 152 IPR009072 GO:0046982
Aip08g02159 241 Gene3D Histone, subunit A 41 158 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g02159 Aip-Chr8 87451825 87452550 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g02159 59 190 CCAAT-HAP5 Transcription Factor Family AT1G56170 87.218 1.60e-81 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Aip08g02159 CBFD_NFYB_HMF 1.9e-17 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g02159 K08066 - gmx:100799981 363.999