Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g02112 ATGGGGAAAGGAAGAGCACCATGCTGTGATAAGTCTCAAGTGAAGAAGGGACCTTGGAGCCCTGCTGAGGATCTTAAGCTTATAGCTTTCATTCAGAAACATGGCCATGAAAACTGGCGTGCCCTTCCGAAACAAGCAGGGCTGATGCGATGTGGGAAAAGTTGCCGTTTGAGATGGATCAATTATTTGAGGCCAGATGTTAAGAGAGGCAATTTTACAGCAGAGGAAGAGGAAACCATAATAAAGCTTCATAAAGCCATGGGGAACAAATGGTCCAAGATTGCATCCCGTTTGCCTGGTCGAACAGACAACGAGATAAAAAATGTGTGGAACACCCACTTGAAGAAGAGATTAACTGCTGCAAAATCTTCAGATTCAAGGGCAGATAATGCAAATGATGGATCTAAGATTGAATCATCAGTGACTTCACCCTCTTCATCTTCGTCTGAATCATTTTTCTCAAATGAAACACCAAAAACTAACAACAACAATCCTTGCAATGAAACGAATGACCATATTTCCCAAATTGATGATGATGATCAAGATTCAGGTGGAAAGTTATTACAAGAAGTAGTTGGTATTACTGAAGAGACAAAAGGGTCATCAAATTCATCATCATCAACATCATTATCTTCTTCTCTTGAAAACAAGAAGCATGATGAAGATCAACAACAATTGGTGTCTCCAACATTATTGAACTGTGTTGGACCCTATGATGTTGATGTTACATTGGAAGAGGTTGATAAGCCAAACAACAATAATTTGGAGACAAAAGAAGATTGTGATTTTTGGAAGATGTTAGATAATATTGAATCATTCCTATCATCAAATGAGGCATCTCCTCCTCCTCCCCAATGCCAAACATCACCACCAAATCTTGTTCATCAAGATGATGATGAAGCCATGATGATGATGATGTGGTCCCATGAATTTGAGAATGTGCTTGGAACAGTGGTAGGTGAAGCAACAACAAAAGGGTCAAACAACAAGGCTCATCAACAAGAAATAATAATGGACCCATCAAATGATGTATTTGATTTAGATCTTGTGACAAGGCCACCAGAACCCGATCAATTAGAATCAGAATTAGACTTGGGATATATTCAATTGTGGCCCTCTTTGCCACCAAATACTATTCTCTAA 1143 0.392 MGKGRAPCCDKSQVKKGPWSPAEDLKLIAFIQKHGHENWRALPKQAGLMRCGKSCRLRWINYLRPDVKRGNFTAEEEETIIKLHKAMGNKWSKIASRLPGRTDNEIKNVWNTHLKKRLTAAKSSDSRADNANDGSKIESSVTSPSSSSSESFFSNETPKTNNNNPCNETNDHISQIDDDDQDSGGKLLQEVVGITEETKGSSNSSSSTSLSSSLENKKHDEDQQQLVSPTLLNCVGPYDVDVTLEEVDKPNNNNLETKEDCDFWKMLDNIESFLSSNEASPPPPQCQTSPPNLVHQDDDEAMMMMMWSHEFENVLGTVVGEATTKGSNNKAHQQEIIMDPSNDVFDLDLVTRPPEPDQLESELDLGYIQLWPSLPPNTIL 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g02112 380 SMART sant 68 116 IPR001005 -
Aip08g02112 380 SMART sant 15 65 IPR001005 -
Aip08g02112 380 Gene3D - 70 141 - -
Aip08g02112 380 Pfam Myb-like DNA-binding domain 69 114 IPR001005 -
Aip08g02112 380 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
Aip08g02112 380 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 63 IPR017930 -
Aip08g02112 380 CDD SANT 71 114 IPR001005 -
Aip08g02112 380 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Aip08g02112 380 Gene3D - 15 68 - -
Aip08g02112 380 MobiDBLite consensus disorder prediction 124 171 - -
Aip08g02112 380 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Aip08g02112 380 CDD SANT 18 63 IPR001005 -
Aip08g02112 380 SUPERFAMILY Homeodomain-like 14 110 IPR009057 -
Aip08g02112 380 MobiDBLite consensus disorder prediction 195 213 - -
Aip08g02112 380 MobiDBLite consensus disorder prediction 119 227 - -
Aip08g02112 380 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Aip08g02112 380 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 4 279 - -
Aip08g02112 380 PANTHER MYB-RELATED PROTEIN 4 279 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g02112 Aip-Chr8 82617340 82621888 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g02112 1 160 MYB Transcription Factor Family AT1G56160 62.428 1.85e-72 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aip08g02112 Myb_DNA-binding 1.4e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g02112 K09422 - gmx:100101836 342.043