Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g02105 ATGCAGATCTTCGTGAAAACTCTTACTGGAAAGACAATCACCCTTGAGGTTGAGAGCAGCGACACCATCGACAACGTCAAGGCCAAGATCCAGGATAAGGAGGGTATCCCACCTGACCAGCAGAGGCTGATCTTTGCGGGCAAGCAGCTGGAAGATGGGCGCACTCTTGCCGACTACAACATACAAAAGGAGTCGACACTTCACTTGGTTTTGAGGCTCAGGGGAGGAACCATGATCAAAGTGAAGACTCTAACTGGAAAAGAAATTGAAATTGACATTGAACCAACTGATACGATTGATCGAATCAAGGAACGTGTTGAAGAGAAAGAGGGCATTCCTCCTGTGCAGCAAAGGCTGATATATGCGGGTAAGCAGCTCGCAGATGACAAAACGGCGAAAGAGTACAACATCGAAGGCGGATCGGTGCTTCACTTGGTGCTTGCATTGAGAGGTGGTGcacaacaggttggtcaggcggtgcctgaacctGGCCCTGTCATCGATGACTACATCCCTGAGTCTCCTCCAGTAAGTTTGGATATGTCGATAGAGTCTCTTTCTACTCGCCCCTCTGACCCTTTTACCATAGAGCCTATCGGGACTTCCGCCACAACTTCTGGTCAGCACTCAGCAGTTGAGCAGGAAATCTTGGTTTTTTTAATTATCAGGACTCCCAAGCACAGGAATTCTCTCTAA 696 0.4598 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKEYNIEGGSVLHLVLALRGGAQQVGQAVPEPGPVIDDYIPESPPVSLDMSIESLSTRPSDPFTIEPIGTSATTSGQHSAVEQEILVFLIIRTPKHRNSL 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g02105 231 ProSiteProfiles Ubiquitin domain profile. 77 152 IPR000626 GO:0005515
Aip08g02105 231 PANTHER UBIQUITIN 1 157 - -
Aip08g02105 231 PANTHER - 1 157 - -
Aip08g02105 231 PRINTS Ubiquitin signature 11 31 IPR019956 -
Aip08g02105 231 PRINTS Ubiquitin signature 53 74 IPR019956 -
Aip08g02105 231 PRINTS Ubiquitin signature 32 52 IPR019956 -
Aip08g02105 231 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
Aip08g02105 231 ProSitePatterns Ubiquitin domain signature. 103 128 IPR019954 -
Aip08g02105 231 CDD Ubl_NEDD8 79 152 IPR038738 -
Aip08g02105 231 SUPERFAMILY Ubiquitin-like 1 76 IPR029071 -
Aip08g02105 231 Pfam Ubiquitin family 3 74 IPR000626 GO:0005515
Aip08g02105 231 Pfam Ubiquitin family 79 150 IPR000626 GO:0005515
Aip08g02105 231 ProSitePatterns Ubiquitin domain signature. 27 52 IPR019954 -
Aip08g02105 231 CDD Ubl_ubiquitin 1 76 - -
Aip08g02105 231 Gene3D - 78 160 - -
Aip08g02105 231 Gene3D - 1 77 - -
Aip08g02105 231 SMART ubq_7 77 148 IPR000626 GO:0005515
Aip08g02105 231 SMART ubq_7 1 72 IPR000626 GO:0005515
Aip08g02105 231 SUPERFAMILY Ubiquitin-like 79 153 IPR029071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g02105 Aip-Chr8 80703872 80710306 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g02105 1 76 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 100.000 1.96e-49 156