Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g02088 ATGAAGGGCAAGGAAGGTAAAATTGCCATGGTAGTGGAAACTGTAACCGATGATATCAGAGTGTCTGAAGTTCATGCATTAAAGGTCATTCTTCGAGGCCCAAAGAACTCTAGGGAAGCTGTGAAACAATTTGGTCCTGCCCTTGGTGTTCCTCAAAGTCATACCAAGCCATATGTACGATCTAAGGGAAGCAAGTTTGAGAAGCATGTTGAGAAATCAGAGTtttaa 228 0.4211 MKGKEGKIAMVVETVTDDIRVSEVHALKVILRGPKNSREAVKQFGPALGVPQSHTKPYVRSKGSKFEKHVEKSEF 75
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g02088 75 Pfam Ribosomal protein 60S L18 and 50S L18e 29 69 IPR021131 -
Aip08g02088 75 MobiDBLite consensus disorder prediction 60 75 - -
Aip08g02088 75 Gene3D - 1 29 - -
Aip08g02088 75 Gene3D - 30 74 - -
Aip08g02088 75 PANTHER BNAC02G39900D PROTEIN 29 72 - -
Aip08g02088 75 PANTHER BNAC02G39900D PROTEIN 1 29 - -
Aip08g02088 75 PANTHER 60S RIBOSOMAL PROTEIN L18 29 72 IPR000039 GO:0003735|GO:0005840|GO:0006412
Aip08g02088 75 PANTHER 60S RIBOSOMAL PROTEIN L18 1 29 IPR000039 GO:0003735|GO:0005840|GO:0006412
Aip08g02088 75 MobiDBLite consensus disorder prediction 52 75 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g02088 Aip-Chr8 74775188 74775892 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g02088 1 68 Cytoplasmic Ribosomal Protein Gene Family AT3G05590 47.619 7.84e-25 88.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g02088 K02883 - pop:7491291 96.6709