Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g02061 ATGTCTTCTTCTTCACTCGACGCCCATCCTCAGTCGGATTCTTCCTGCTCGCGGTGGTCTTGTCACCGTCGTCTCGGCGTCATTGTCTCGAAGATTACACAGAAAAAAACCAATTACTTGAAACACTTGCACACAAACATGCCCAGTCCTAACAACAGCTTCCCAATGGATCCTTCATTGGGTCCTTCCCCTGTTCTCAGAACCTTGGTTGTAATCATGGGAACAACTATGCATGCTTCTGTAGGTGAGGATCTGATATATGTGTTCCAATCATTGATATTAGATGGAACTGTTTTAAAGCTTAATATTGTTGTTCTTGGAGAGATGGTAGACCAGATCAAGGGTTTTCTGGCATCGGGCGATCAACAACTGTCAATAGTTGTTTTTCAATTTGCAAGAGTAAAAAATGCTGGAGGTACCAATATTGTGCAGAACATTATGTATGGTACTAGACTCTTGATAAATCCGGATATTCTCGAGGCTTTGATGCTTCAAAAAAGCGTGTACTATAGAGAGATCTCGCAGTACCTATCTGTGATTTCTGGCAAACCGACATATCTTGATGAAGATGAGGTTTTATATTCCACTGGGAGGAAGACAATAAAGGAGTTACGTGCGGTTGCGGATGTTGGATTCTATGTTGTTCGGGCCACTGTTCTTGATGTTGAACCCGTTCCAAGTTGGTGGTATAAATCATGTCTTTGTAGCGTGAAGGCAGAAGCTAATGCGGATGAATACTTCTGCGACGGCTGTAATAGGGACGTGAATAATGTGGTTGACAGGTACAAGTTGAATTTGTTGGTTTTTGATGGTATTGCTACAACGAATTTTGTTGTGTTCGATAAGGAGGTCGCAGCTCTATTCGGACGAACCTGTACTGAGATGGTGAAAGAGTTGAATGAAAAAGGGGAAGCAAGCAAAGATCCTATTGGTTTTAATGAGTTTTTCCTTGATAAGGAGTTTATATTCAAGGTCGAAGTAGAAACTACTGGATGGTGCGATTCTTATGATGTATCGATGATACGTTCTGATCCTACGAGTTTACTGAGGTGGAGGGACAATCAAGGCCCGGTAAAATCTGATGTACCCCCTGCTGGTCCTGTTAACCCTGTTCAGCCTCGAGGTGAAGATGGATGTTCTGTTTGTGATGAGTCACCTGATCCAATCGTGAAAAATCTGTCTGTTACTAAAAAACCTGTTGTCAGGCACCTGTTGGATGAGTTTAACATGTCTGGTGCTCCTTCCATTAAAAAATAG 1257 0.4232 MSSSSLDAHPQSDSSCSRWSCHRRLGVIVSKITQKKTNYLKHLHTNMPSPNNSFPMDPSLGPSPVLRTLVVIMGTTMHASVGEDLIYVFQSLILDGTVLKLNIVVLGEMVDQIKGFLASGDQQLSIVVFQFARVKNAGGTNIVQNIMYGTRLLINPDILEALMLQKSVYYREISQYLSVISGKPTYLDEDEVLYSTGRKTIKELRAVADVGFYVVRATVLDVEPVPSWWYKSCLCSVKAEANADEYFCDGCNRDVNNVVDRYKLNLLVFDGIATTNFVVFDKEVAALFGRTCTEMVKELNEKGEASKDPIGFNEFFLDKEFIFKVEVETTGWCDSYDVSMIRSDPTSLLRWRDNQGPVKSDVPPAGPVNPVQPRGEDGCSVCDESPDPIVKNLSVTKKPVVRHLLDEFNMSGAPSIKK 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g02061 418 Gene3D - 79 174 IPR012340 -
Aip08g02061 418 Pfam Replication factor-A C terminal domain 212 334 IPR013955 -
Aip08g02061 418 SUPERFAMILY Nucleic acid-binding proteins 197 338 IPR012340 -
Aip08g02061 418 MobiDBLite consensus disorder prediction 354 380 - -
Aip08g02061 418 CDD RPA1_DBD_C 199 328 IPR013955 -
Aip08g02061 418 Gene3D - 191 348 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g02061 Aip-Chr8 68979576 68986233 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g02061 177 307 Core DNA Replication Machinery Family AT5G61000 27.068 3.59e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g02061 - - ahf:112729129 570.466