Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g02052 ATGACCTTGACTTACACAATTGGCACACCCTCTCTCTTTGAAACTTCATCTTTCTCCATCTTCATGCACTCCAAAGAACATCGAAGAACCCTAGCACTCCGTGAAGAACCACAGCACTCTGCGAAGAACATCGCCGACGCTGCAATGCCTCCGTCGATGTTCCCTTCGCCGCCGCTCCCTTCTTCGCTGCAAACCCCTAACCCCTTTCTATTTTTCACTGGGCTATCGAGCCAGCAGGGTTTCTACAATGCAAACAAATTTGCCAAGCTTGTGAGAAGAAGAGAGTTCATGGCCAGCACCGCTGAGGGAACCACCGGGGCTTTTACCTGCGCCACTTGTAGCTGTCATAGAAACTTCCATAAAAGAAAGGAACTAGCTGCACTATCCAGTCAGGTGCAGGCTCCAGCTGTGCAAATTCAAGAGCCAAAATCTAAATCTGATTGCTATGGAATTTTCTGCCTCACCTATGATTTGAAGGCTGAGTAG 486 0.4856 MTLTYTIGTPSLFETSSFSIFMHSKEHRRTLALREEPQHSAKNIADAAMPPSMFPSPPLPSSLQTPNPFLFFTGLSSQQGFYNANKFAKLVRRREFMASTAEGTTGAFTCATCSCHRNFHKRKELAALSSQVQAPAVQIQEPKSKSDCYGIFCLTYDLKAE 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g02052 161 Pfam ZF-HD protein dimerisation region 94 124 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g02052 Aip-Chr8 67416716 67419441 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g02052 94 125 ZF-HD Transcription Factor Family AT1G74660 65.625 6.86e-09 48.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Aip08g02052 ZF-HD_dimer 6.8e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g02052 - K00051 adu:107468004 68.9366