Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g02008 ACACTGTCACCGGCCAGAATCGCAAGTTCTGTCCGCCGCCACTTACGCCGCGATCGCAGCAGAGTTCCAAGTCCCGGTCGAGCCTGCTGCCCCTCCAGCCGTTTCGATAGCCCGGCGGAGCCTCGATGAGTGGCCGCAGGCGAACTCTGATGACATTGGGAAGTGGTTGCCCCCACAGCCACCGTTGACCCCCGGTGGCGGCATGAGAGGTAACCCTGGTGAAAGGTTAAAACTTGATCTCTCCTCAATTCGGATGAACAATGATAGGAATTGCAATAATGGCAGTAATGGTAGTGGTAATAATAATAGTTGTAACAATAATGGTGTTAGTGAACTCTTGAAGAGGGATAGAATTGCATTTTTTGATAAGGAGTGTTCAAAGGTTGCTGAACATGTTTACCTTGGTAGTGATGCTGTTGCTAAGAATAGGGATATATTGAAACAGAATGGGATCACTCATATCTTGAACTGTGTTGGTTTTGTGTGCCCCGAGTATTTTAAGGCTGATTTTGTGTATAGAACATTATGGCTTCAGGATAGTCCTTCAGAGGATATTACTAGTATCTTGTATGATATGTTTGATTACTTTGAGGATGTTAGGGAACAAGGTGGTAGGGTGTTTGTGCACTGTTGTCAAGGTGTGTCTAGGTCTACTTCGTTGGTGATTGCATACCTCATGTGGAGGGAAGGACAGAGTTTTGATGATGCTTTTCAGTTGGTGAAGGCTGCAAGGGGTATTGCCGATCCGAATATGGGGTTTGCTTGCCAGTTGTTGCAGTGCCAGAAGAGGGTGCATGCAGTTCCTCTTAGTCCTACCTCTTTGCTTAGGATGTATAGGATGGCTCCACACTCGCCTTATGATCCTTTGCATCTCGTCCCCAAAATGTTAATGGATCCTTCGCCTTTCGCATTGGACTCTAGGGGAGCTTTTTTTGTACATATTCCCATTGCAATATTTGTTTGGATTGGTATGAAGTGTGATCCCATCATGGAAAGGGATGCTAGAGGTGCTGTTGGTCAGATTATTCGCTATGAGAAAGTGAAAGGACCTGTTAAAGTGATTAGGGAAGCTCATGAACCTGCTGACTTTTGGGAAGTTTTCTCAAGGTTCTTGCCTTTGATGGATAAATCTTACAGTAAAGTAGAAAGTTTCAAATCAAGTACTAAGGTTCAGCCTGGTGAGAGGAAAGTGCGGAGTCTATGA 1204 0.4527 HCHRPESQVLSAATYAAIAAEFQVPVEPAAPPAVSIARRSLDEWPQANSDDIGKWLPPQPPLTPGGGMRGNPGERLKLDLSSIRMNNDRNCNNGSNGSGNNNSCNNNGVSELLKRDRIAFFDKECSKVAEHVYLGSDAVAKNRDILKQNGITHILNCVGFVCPEYFKADFVYRTLWLQDSPSEDITSILYDMFDYFEDVREQGGRVFVHCCQGVSRSTSLVIAYLMWREGQSFDDAFQLVKAARGIADPNMGFACQLLQCQKRVHAVPLSPTSLLRMYRMAPHSPYDPLHLVPKMLMDPSPFALDSRGAFFVHIPIAIFVWIGMKCDPIMERDARGAVGQIIRYEKVKGPVKVIREAHEPADFWEVFSRFLPLMDKSYSKVESFKSSTKVQPGERKVRSL 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g02008 400 ProSitePatterns Tyrosine specific protein phosphatases active site. 208 218 IPR016130 GO:0016311|GO:0016791
Aip08g02008 400 PANTHER MKPA PROTEIN 34 399 - -
Aip08g02008 400 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 183 244 IPR000387 GO:0016311|GO:0016791
Aip08g02008 400 SMART dsp_5 124 263 IPR020422 GO:0006470|GO:0008138
Aip08g02008 400 Gene3D Severin 276 371 IPR029006 -
Aip08g02008 400 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 115 265 IPR029021 -
Aip08g02008 400 CDD DSP 125 259 - -
Aip08g02008 400 ProSiteProfiles Dual specificity protein phosphatase domain profile. 124 266 IPR020422 GO:0006470|GO:0008138
Aip08g02008 400 Pfam Dual specificity phosphatase, catalytic domain 132 262 IPR000340 GO:0008138|GO:0016311
Aip08g02008 400 SUPERFAMILY Actin depolymerizing proteins 272 381 - -
Aip08g02008 400 Gene3D Protein tyrosine phosphatase superfamily 96 266 IPR029021 -
Aip08g02008 400 MobiDBLite consensus disorder prediction 48 73 - -
Aip08g02008 400 PANTHER PROTEIN-TYROSINE-PHOSPHATASE MKP1 34 399 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g02008 Aip-Chr8 61226639 61227842 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g02008 25 160 Protein tyrosine phosphatase (PTP) family AT3G55270 53.676 8.28e-34 131
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g02008 - - gmx:100790177 557.37