Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g02005 atgaaagaacagattcttcacaaagacaagttagggaatttagcagaCACCAACCCACGTCATTCTCCACTGCCGTCGCCGCTCCGTCACGGTTGCTTTGCCGGCGCTCCTCAACACACACTCTCTCTCAACCATAAACCCTACTCCGACGCCTTACTCAAACCAAGGGTTTTCAGCGAGGTAGAACTCCAGCGAGGGATGACAGGCAGGAGCACCTTGTGCTTATCCAATGGCCTGGTGAGGCTCATCTCAGCTCCTGGAGACTCTTCCACTTTCAAATATAAAATGGATTTGCCCAACTGCTCCTACCCGTCCTGTGGCCATACTTGGTGGCTTTTTTTGCACTACTCTTCATACAGATGGGCGCTTAGTGGCACTCCCCTGCAGAACCGTGTTGGAGAGCTGTATTCTCTGGTTCAGTTTCTACAAATAGGTCAAGGAACATCCACTGCCACTGGTCACTCCAGCACGAGTGCTCCCAAGCTTAGATATGATGGTGCCAAATGTTGGCACCCACCTAAGCCTGGATTGAAGCGTATCTCTCAGGTTTTTAAAGAAAACTACAACAAGCCTTGGCTGAGTTTTGATGAGGCAGATGATGATACTCGAAAAATATGGTGGACTGAGTGGAGGAAATGCTTTGACATTATTGATACGGAAGAGGATGATATCTATCAAGCTTGGAGGTTTAGGGCTGCCAAGCTCTTGCGAGGTATGCTCCATGCCATTCGCAAAAAAGGTGCCCGTCCATATTGGATCCCACCAGAAGTTCTCGGTGAATTGATGAGACATTGGGACACTGATGCCTATAGACAATTACAGGCGAGAAATACAGCTGCCAGGAAATCGACTCGAGGTACTTCCCTTCACACTGCAGGAGGCACCACTTTTCCAGAAGCGAGGTTACGCTTGGTAAGTTGTTTATAG 927 0.4671 MKEQILHKDKLGNLADTNPRHSPLPSPLRHGCFAGAPQHTLSLNHKPYSDALLKPRVFSEVELQRGMTGRSTLCLSNGLVRLISAPGDSSTFKYKMDLPNCSYPSCGHTWWLFLHYSSYRWALSGTPLQNRVGELYSLVQFLQIGQGTSTATGHSSTSAPKLRYDGAKCWHPPKPGLKRISQVFKENYNKPWLSFDEADDDTRKIWWTEWRKCFDIIDTEEDDIYQAWRFRAAKLLRGMLHAIRKKGARPYWIPPEVLGELMRHWDTDAYRQLQARNTAARKSTRGTSLHTAGGTTFPEARLRLVSCL 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g02005 308 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 116 192 IPR027417 -
Aip08g02005 308 Pfam SNF2-related domain 117 148 IPR000330 GO:0005524|GO:0140658
Aip08g02005 308 MobiDBLite consensus disorder prediction 1 20 - -
Aip08g02005 308 MobiDBLite consensus disorder prediction 1 15 - -
Aip08g02005 308 Gene3D - 113 166 IPR038718 -
Aip08g02005 308 PANTHER OS08G0392500 PROTEIN 145 304 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g02005 Aip-Chr8 60618910 60627093 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g02005 112 144 RAD5 or RAD16-like Gene Family AT1G05120 75.758 7.72e-10 58.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Aip08g02005 SNF2_N 4.8e-07 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g02005 K15083 - aip:107611125 363.999