Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g01974 ATGGCTTCTCCGGCAAACCCTCCAACTCAAAGCAGGGTATCAACCGAAACCATTCAGAAAGCAATCGACGCACTCCTCAAATGGCGCAAATCCAATTCCACCGCCAAACCCCAAAAACTCTTCGACAACGACGAGGAATTTATCTACCTCGTACTCACCCTCAAGAAGATACCCCAAAAGGATCACACTAACGTAACCCCACGCAAGATTCCTCTACCCTATACCCTCATCTCCCCTTCCTCTGAAACTTGCCTCATCGTCGACGACAGGCCCAAATCGGGCCTCACCAAGGCCCAAGCCCAATCTAAGATCCAGGCTGAGAAGGTCGCCGTTTCGAAGGTCCTCAAGCTCTCGAAGCTCGCCTCCGATTACAAGCCATTTGAGGCAAAGCGGAAGCTATGCGACTCGTACGACTTGTTCTTCGCGGATAGGAGGGTGGTTCCTCTTCTTCCGAGGCTGTTGGGGAAGCAATTCTTGAAGAAGAAGAAGGTTCCGGTGCCCTTGGATTTGAAGAAGGGGAATTGGAAGGAGCAGGTTGATAAGGCGTATTCCTCGGCGTTGTTTTCTGTTGGGAATGGGACTTGTTGCGTTGTCAGGGTCGCTAAGGTGGCGATGGCGAGGGAGGAGGTCGTGGCGAATGTGACCGCGGCAATTGAGGGAATTGTGGATGCTGTGCCGAGGAAGTGGAAGAATGTGAGGTCGTTTCATGTGAAGCTGTTGGAGTCGCTGGCACTGCCGGTTTATCAGGCTGTGCCGGATGTGAGGTTGAGGATTGAGGGAGGAGACAGTGAAGGAGAGGCTATGGAGAAGGAGGGATTGAAGAAGAAGAAGAAAAAGGGGAGGATTCATCAAGTTAGGTATATGGATAGTGATGATTTTGAGCATGCGGATAATGATAACGGTAGTGACTTGGTGAGTTTGAAGATGAAGAAAGGAGATCAAGTGAAAAATGGGGCTTTGAGTGGGTTGAGTAATGTCAAGCGAGAGACGAAGAAACGCGGGTTAGTTCAGTGGAATGGAGCAGATATGGCAAAGAAAGTAAAGCATTAG 1050 0.501 MASPANPPTQSRVSTETIQKAIDALLKWRKSNSTAKPQKLFDNDEEFIYLVLTLKKIPQKDHTNVTPRKIPLPYTLISPSSETCLIVDDRPKSGLTKAQAQSKIQAEKVAVSKVLKLSKLASDYKPFEAKRKLCDSYDLFFADRRVVPLLPRLLGKQFLKKKKVPVPLDLKKGNWKEQVDKAYSSALFSVGNGTCCVVRVAKVAMAREEVVANVTAAIEGIVDAVPRKWKNVRSFHVKLLESLALPVYQAVPDVRLRIEGGDSEGEAMEKEGLKKKKKKGRIHQVRYMDSDDFEHADNDNGSDLVSLKMKKGDQVKNGALSGLSNVKRETKKRGLVQWNGADMAKKVKH 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g01974 349 Pfam Ribosomal protein L1p/L10e family 26 242 IPR028364 -
Aip08g01974 349 Gene3D - 50 239 - -
Aip08g01974 349 SUPERFAMILY Ribosomal protein L1 12 248 IPR023674 -
Aip08g01974 349 Gene3D - 84 186 IPR016095 -
Aip08g01974 349 PANTHER RIBOSOMAL L1 DOMAIN-CONTAINING PROTEIN 1 6 295 - -
Aip08g01974 349 CDD Ribosomal_L1 18 247 IPR028364 -
Aip08g01974 349 PANTHER RIBOSOMAL PROTEIN L7AE FAMILY MEMBER 6 295 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g01974 Aip-Chr8 56871245 56872734 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g01974 11 238 Cytoplasmic Ribosomal Protein Gene Family AT5G22440 24.891 1.08e-08 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g01974 K14775 - gmx:100815650 362.073