Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g01937 ATGTATCTCTCTGGATTACGATGTATATGTGGTCGGGTGCGTTCTGTTTGTCTCTGCGCTTTGGGTAGTTGGAGTTCAAAGCGCTGGGGTGGTGGTAGGTCTTCAAATTCGATCTCCACAATCTGCTCAAGTAGTCAAAGTTGGAAATTGAAAAGGCGAGTTGAACATAGCCGATTAGCCGATTCGGCTGTTCTTATTGGAACTGATTCACAAGTGAAGGTGGTTTTCTCCTTTGAGAAGGAAGCTAAATTCACTGATGTTAAGGCTTTGGTATTCTTGGTAGTTGCTAATGGTTTGGCTGCTGGATACTCTTTGATTCAAGAACTTCGTTGTGTTGTGAGTTTGGTTAGGGGAAGTGTTCTCTTCAACAAGCCCTTAGCTTGGGCCATTTTCTATGCTGATCAGAATGACCCAAACAAAACTCCAGCACTATCACGCCACAAGAGAGGATGTAACTATAAGAAATCATTCTACCAAAAGAAATACTGTAAATGCTTTCAGGCTGGTGTTGGATGTTTCATAAACTGTAGATGTGACACGTGTAAGAACACGTTTGGTAGAAAGGATGGAGTAGAAACCCAACCAGAAGTAGAAATAGAGGCCTGTGGTAAAGAGTTTATTGAAAATGCATCACGGAAAATTGAAATTCAGAACTCCCACGGGATGTCTAGAGTAAGATGTTTGGGACTCTTTGCTCTCAGCCACTTGAACATTCTCAAACTGTTTCACACCACGAAACGATTGGAGGTAGAGGCAGAAGTGGATAGGTCTCCGATGACTTGGACCAAAACTACTTCTCCAAATGGGAAGAAATTTTTAATTGATAGTCAATAG 834 0.4185 MYLSGLRCICGRVRSVCLCALGSWSSKRWGGGRSSNSISTICSSSQSWKLKRRVEHSRLADSAVLIGTDSQVKVVFSFEKEAKFTDVKALVFLVVANGLAAGYSLIQELRCVVSLVRGSVLFNKPLAWAIFYADQNDPNKTPALSRHKRGCNYKKSFYQKKYCKCFQAGVGCFINCRCDTCKNTFGRKDGVETQPEVEIEACGKEFIENASRKIEIQNSHGMSRVRCLGLFALSHLNILKLFHTTKRLEVEAEVDRSPMTWTKTTSPNGKKFLIDSQ 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g01937 277 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 149 184 IPR005172 -
Aip08g01937 277 Pfam Casparian strip membrane protein domain 62 135 IPR006702 -
Aip08g01937 277 SMART CXC_2 146 187 IPR033467 -
Aip08g01937 277 PANTHER CASP-LIKE PROTEIN 2B2 62 135 - -
Aip08g01937 277 ProSiteProfiles CRC domain profile. 134 186 IPR005172 -
Aip08g01937 277 TIGRFAM A_tha_TIGR01569: plant integral membrane protein TIGR01569 62 135 IPR006459 -
Aip08g01937 277 PANTHER NITRATE, FORMATE, IRON DEHYDROGENASE 62 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g01937 Aip-Chr8 53937530 53940183 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g01937 99 216 CPP Transcription Factor Family AT3G22760 41.606 3.79e-23 96.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Aip08g01937 DUF588 5.4e-18 CL0396
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g01937 - - aip:107639576 259.996