Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g01823 ATGAAACTGGTGAGTTACATGTCACAATGGAGAGGCATTGCAAAGGAAGCTATGGACCGAACAGCCATAGCAGTGAAGTTCCTCTGTTGCCTTCACATTACGGACACCTACTTCTGTTCCCCAACTCACGTGTATGGGCCTAGTATGCTACCCACACTCAACATGGTAGGCGACATCGTTTTGGTTGAACACGTGTCTCAGAGGCTTGGGAAGGTTCGGCATGGTGACTTGGTTGTGATTCGGTCACCGTTGGACCCTAAGAGGTGCCTTACCAAAAGGATTATGGGAATGGAAGGGGATACTGTTACTTACTTTGATCCTATGCTTGGTGATGCTACTCGTGTTGCTGTGGTGCCAAAGGGGCATGTTTGGATTCAAGGGGATAACATCTTTGCATCCCATGATTCACGGCATTTCGGCCCTGTTCCTTATGGCCTTATACAAGGAAAAGTGTTTTTCAGGGTTTGGCCACTTGATTGCCTTGGAGTACCGGGTCAATAA 501 0.479 MKLVSYMSQWRGIAKEAMDRTAIAVKFLCCLHITDTYFCSPTHVYGPSMLPTLNMVGDIVLVEHVSQRLGKVRHGDLVVIRSPLDPKRCLTKRIMGMEGDTVTYFDPMLGDATRVAVVPKGHVWIQGDNIFASHDSRHFGPVPYGLIQGKVFFRVWPLDCLGVPGQ 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g01823 166 PRINTS Bacterial leader peptidase 1 (S26A) family signature 37 53 IPR000223 GO:0006508|GO:0008236|GO:0016020
Aip08g01823 166 PRINTS Bacterial leader peptidase 1 (S26A) family signature 90 102 IPR000223 GO:0006508|GO:0008236|GO:0016020
Aip08g01823 166 PRINTS Bacterial leader peptidase 1 (S26A) family signature 118 137 IPR000223 GO:0006508|GO:0008236|GO:0016020
Aip08g01823 166 PANTHER PEPTIDASE S24/S26A/S26B/S26C FAMILY PROTEIN 7 161 - -
Aip08g01823 166 PANTHER PROTEASE FAMILY S26 MITOCHONDRIAL INNER MEMBRANE PROTEASE-RELATED 7 161 - -
Aip08g01823 166 CDD S26_SPase_I 40 151 IPR019533 GO:0004252|GO:0006465
Aip08g01823 166 Pfam Signal peptidase, peptidase S26 113 156 IPR019533 GO:0004252|GO:0006465
Aip08g01823 166 Pfam Signal peptidase, peptidase S26 23 106 IPR019533 GO:0004252|GO:0006465
Aip08g01823 166 Gene3D Umud Fragment, subunit A 34 161 - -
Aip08g01823 166 TIGRFAM sigpep_I_bact: signal peptidase I 25 105 IPR000223 GO:0006508|GO:0008236|GO:0016020
Aip08g01823 166 SUPERFAMILY LexA/Signal peptidase 36 162 IPR036286 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g01823 Aip-Chr8 41016391 41021013 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g01823 49 162 MADS-box Gene Family AT1G29960 49.565 2.45e-36 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g01823 K09647 - zju:107414309 242.276
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g01823 08 41016391 41021013 Aip08g01823 08 41016391 41021013 ECH