Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g01817 ATGAGGAAGTTCCTGGTTATAGCCTTATCTACAACAATATGCTTCATCGCTTTCGTGATATCCAAGATCTTGATCTCTGTTCTTCTCTACAAAAGATGGAAAAGAAAGCACATAATTTATGAAAATGAAGGAAAGATGGTAATCTTTAGATCTTCATTGCTGCAATCTCTTAAATCCGATGCAGTCTTACAGAAGACACGAAAACTGACCAATAAAGACATCATTGGATCTGGTGGCTATGGAGTGGTTTATGAACTAAGACTAAATGAATCTGTAGCCTTCGCCGTGAAGAGGCTGAACCGGGGATCAGAAGAGAGGGACAATGGTTTTGAGCGAGAGTTGGAGGCGATGGCGGACATAAAGCATCGGAATATTGTAACTCTTCATGGATATTACATTGCACCACACTACAATCTTCTTATATATGAGCTAATGCCAAATGGAAGTTTGGATTCCATTTTGCATGGGAGATCAAAGGAGAAGAAGCATTTGGATTGGCCAACAAGATATAGAGTAGCTGTAGGTGCTGCTAGAGGAATATCATATCTTCACCATGATTGCATCCCTCACATTATCCATAGAGATATCAAATCAAGCAACATATTGCTGGATCAAAACATGGGGGCGCGAGTTTCTGACTTCGGATTAGCCACGTTGATGGAGCCGAATAAGACTCATGTTTCGACAATGGTGGCAGGAACCTTTGGATACTTGGCACCTGAATATTTCGATACTGGAAGAGCAACTGTTAAAGGTGATGTTTACAGCTTTGGAGTGGTGTTACTAGAGCTCTTAACTGGGAAGAAACCCAGTGATGAAGCATTTGTAGAAGAAGGAACCAAGCTTGTCACATGGGTGAAAGCTGTTGTTCAGGAGAAGAAAGAAGAATTAGTTCTTGACAGTAGCTTAGGGTCCTGTCCAATGCAAGAGGTAAACAAGGTGTTCAACATTGCAATGAAGTGTCTTGAACCAGACCCCTTGAATAGACCAAACATGGCTGAGGTTGTCAACTTGCTTGAACAAGCAGTATCATGCAAACATGTTACTACAACATTGCCATGTACACTTAATGACATGTCATCCTAA 1086 0.4107 MRKFLVIALSTTICFIAFVISKILISVLLYKRWKRKHIIYENEGKMVIFRSSLLQSLKSDAVLQKTRKLTNKDIIGSGGYGVVYELRLNESVAFAVKRLNRGSEERDNGFERELEAMADIKHRNIVTLHGYYIAPHYNLLIYELMPNGSLDSILHGRSKEKKHLDWPTRYRVAVGAARGISYLHHDCIPHIIHRDIKSSNILLDQNMGARVSDFGLATLMEPNKTHVSTMVAGTFGYLAPEYFDTGRATVKGDVYSFGVVLLELLTGKKPSDEAFVEEGTKLVTWVKAVVQEKKEELVLDSSLGSCPMQEVNKVFNIAMKCLEPDPLNRPNMAEVVNLLEQAVSCKHVTTTLPCTLNDMSS 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g01817 361 SMART serkin_6 69 343 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip08g01817 361 ProSiteProfiles Protein kinase domain profile. 69 343 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip08g01817 361 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 2 344 - -
Aip08g01817 361 Gene3D Transferase(Phosphotransferase) domain 1 145 352 - -
Aip08g01817 361 PANTHER BNAA07G39120D PROTEIN 2 344 - -
Aip08g01817 361 ProSitePatterns Protein kinases ATP-binding region signature. 75 97 IPR017441 GO:0005524
Aip08g01817 361 Pfam Protein tyrosine and serine/threonine kinase 70 339 IPR001245 GO:0004672|GO:0006468
Aip08g01817 361 ProSitePatterns Serine/Threonine protein kinases active-site signature. 191 203 IPR008271 GO:0004672|GO:0006468
Aip08g01817 361 SUPERFAMILY Protein kinase-like (PK-like) 54 340 IPR011009 -
Aip08g01817 361 Gene3D Phosphorylase Kinase; domain 1 31 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g01817 Aip-Chr8 40868639 40871729 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g01817 3 343 Receptor kinase-like Gene Family AT2G35620 44.798 6.39e-98 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIIIa Aip08g01817 PK_Tyr_Ser-Thr 2.3e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g01817 - - ahf:112703495 714.916
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g01817 08 40868639 40871729 Aip08g01817 08 40868639 40871729 ECH