Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g01809 ATGTCAATCTCTTACAGGGCCATTTCTCTAGTTCTGCTAATGCTTGTCAATGGTTTTGTTTCAGATGCAAGACAACTTAATGAGAGAACAGAACATCATGCTAATGACCCTGAACCCGAGCCTGTTATGCTTGATGCAATCCCCACTTTGAAGTTCAACCAAGAGGCCTTCAGTGCCATTGAAGATACACAGTGTGTCATATGTTTGGCAGATTACAGAGAAAGAGAAGTGTTACGCATCATGCCGAAATGCGGTCACACATTTCATCTTTCTTGCATTGACATATGGCTGAGGAAACAATCCACTTGCCCGGTATGCCGTCTGCCATTGAAAAACTCGTCCGAGGCGAAACATGTTAGACCTGTTACATTTACCATGAGCCAGCCTCTTGATGAGTCGCACACACCAGAAAGGAATCAAGATAGTGAGAGTCGTGTCGAACCGGCCGCTAGCAACTCCTCACAACCACCACCTCCCGGAGAACCAGAAGCAAGGCAATGA 501 0.4611 MSISYRAISLVLLMLVNGFVSDARQLNERTEHHANDPEPEPVMLDAIPTLKFNQEAFSAIEDTQCVICLADYREREVLRIMPKCGHTFHLSCIDIWLRKQSTCPVCRLPLKNSSEAKHVRPVTFTMSQPLDESHTPERNQDSESRVEPAASNSSQPPPPGEPEARQ 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g01809 166 MobiDBLite consensus disorder prediction 119 133 - -
Aip08g01809 166 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 41 117 IPR013083 -
Aip08g01809 166 CDD RING-H2_EL5_like 64 107 - -
Aip08g01809 166 SMART ring_2 65 106 IPR001841 -
Aip08g01809 166 Pfam Ring finger domain 64 107 IPR001841 -
Aip08g01809 166 PANTHER OS11G0150450 PROTEIN 26 142 - -
Aip08g01809 166 MobiDBLite consensus disorder prediction 152 166 - -
Aip08g01809 166 PANTHER OS02G0676500 PROTEIN 26 142 - -
Aip08g01809 166 MobiDBLite consensus disorder prediction 119 166 - -
Aip08g01809 166 SUPERFAMILY RING/U-box 54 113 - -
Aip08g01809 166 ProSiteProfiles Zinc finger RING-type profile. 65 107 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g01809 Aip-Chr8 40060681 40062910 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g01809 54 110 C3H Transcription Factor Family AT4G10160 56.140 4.27e-20 81.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g01809 - - aip:107611002 281.182