Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g01682 ATGATCACTACTTCCTCTAAACTTTTCTTCTTTTCATCATTCCTTGCACTTTGCTTCATGCTATATCCTATAGAAGCTACTTCTCGGCTGCCAGACACAGAAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAGAAACATTGGAAGCTCTGAAGCAAATAAAAAAAACGCTCGGTTGGGACTTGAAGAACATAGATCCATGCAGTAAGGGGGGGATTATTTCAAACCCAGTTCGCTCAACATCAGAAATAATTAATGTTTCATGTGATTGCTCCATTGCTCATGACAACTTCTGCCATATCATTGCCATAATTCTGAGTGCACAAAATCTTCAAGGAAAACTTCCTCCAGAACTTGTCAAGCTGCCATACCTTCAAGAGATTAATCTTACCCGCAATTACCTTAGCGGTACGATTCCTAGAGAATGGGGTACGATGAACCTTACCAAAATTGCACTTGTTGCAAACGGACTGAGTGGTGAAATCCCTAAGGAGCTAGCAAACATCACCACTCTCAAAACTTTGTCCTTAGAGTTCAATAATTTCTATGGAAATCTTTCAGTTCTTGGGTCTCTTCCACACCTTGAAATACTGCCTTCTACCTCCACGCGGCATTGCTCCATCAGGCTTTCGCCCATTGCGGAATCTTACCTCTTTAACAATTTCACTGGAGAACTGCCTGAAACATTTTCAAATCTAATCACATTAAAGGAACTCCGTCTTGGTGATAATCAATTCTCAGGAAAAATACCTAATTTCATACAAAAATGGACAGGACTTGAAAATTTAGTAATACAGGGGAGTGGTTTTACTGGGCCAATTCCATCTGAAATTTCATATTTACTTAATTTAGAAGACTTGAGGATTAGTGACCTGAATGGACCTGAGTCTAAATTCCCACCTCTCGATAATATGACAAACTTGGGAGTATTAGACCTCAGCTATAACAAATTAGGAGGAGAAATTCCAAAGTTTCTTACATCGCTATCAAGTATAAAGTACATATATTTAACTGGAAACATTCTCACTGGACAAGTGCCCGCCGATTGGACTGCACCCATAGATCTTTCATATAACAACTTCAGCAACTCCCCAGAAACAGTAACATGTCAAATGTCAAACATAGGACCTCTTTCTTGTGGGCAAAGCAAAGAAAAATGCCCAAAATACTATTATTCTTTCCATATAAATTGTGGTGGAGATAGTAGTGTACAGAAAGGAAGGATAACATATGAGAGTGATTCATATAAGGGAGTACCATTTAAGAAAAGTACAGTTGAATCATCAAATTGGGCAATTAGTACAACTGGTGGTGATTTCATGGATAATGTTCATCAGTACGACCTTATCCAAGAAAATGAAACCAAACTTGCCATAGTTGATGATGTTGATCTTTATACAAAGGCACGTGGTTCTCCCATTTCTTTGACTTACTATGGGTTTTGCCTGGCAAATGGAAACTACACCGTCAATCTCCACTTTGCAGAGATCGTTTTTATCAATGGCACCACATATAGCAGCCTAGGAAGGCGTGTATTTGATGTATACATTCAGGGAGAGCGTGTTCTAAAGGATTTCAATATTGCAAAAGAAGCAAAAGGAATTGGAAAGGCAAATATTCAAAATTTCAGTGCTTACGTGAGCAACAATGAGTTAGAGATCCGGTTATATTGGGCAGGGAAAGGTACTACTGGTGTTCCATATAGATCACAATATGGCCCTCTTATATCAGCAATTTCTGTCACTTCTGACTCATTACCTGAGCACAATCACATATCTACAAGGCTAATGGCTGGAATTGTTGCTCCAACAGTGATAGTTATCATTATCCTAATTATTTGTCTACTTTGGTGGAAAGGTTGTCTAAGAAAGAAAACATCATTAGAAAAAGCAGAGCTAAGAAATTTAGATTTACAAACTGGTCTATTTTCCTTGCATCAAATTAAGGCAGCAACAAACAACTTTAATATCTCCAATAAAATTGGTGAAGGAGGCTTTGGCCCTGTTTATAAGGGTATTTTACCAAATGGCACTATAATAGCAGTCAAACAACTTTCGTCTAAATCAAAGCAAGGAAACCGTGAGTTCATCAATGAGATAGCAATGATCTCAGCATTACAACACCCTTGTCTTGTTAAACTTTATGGATGCTGTGTTGAGGGAGATCAACTATTGTTGGTATATGAATATATGGAAAACAATAGCCTTGCGTATGCATTATTCGGGCCCAAAGAGAATGAATTAAAATTGAATTGGCCAACGAGACAGAAGATTTGTGTTGGTATTGCTAGAGGTTTGGCTTTTCTCCATGAGGAATCAAGATTGAAAATTGTTCATAGGGATATTAAGGCAACTAATGTGTTGCTCGACAAAAATTTAAATCCAAAAATTTCTGATTTTGGTTTAGCCAAACTCCATGAAGAGGATGCTACTCACATTAGTACTCGAATAGCTGGGACATATGGATATATGGCACCCGAATATGCAATGAATGGTTATTTGACTGATAAAGCAGATGTTTATAGTTTTGGAATTGTTGTCTTGGAACTTATTAGTGGAAAGGCTAATACCATTCATCGATCAAAGGAGGAAGTGTTATATCTTCTTGATTGGGCACATTTGTTGAAAGAGAAAGGCATGCTCATGGAGCTAGTTGATCGAAGGTTAGGTTCAGATTTCAATGAAGAGGAAGTAATGGTGATGATCCAAGTTGCTCTCTTATGCACCAATGCGACTGCAAATCTTAGGCCTTCCATGTCTTCAGTTCTAAGCATGCTTGAAGGCAAAACCATTGTTCCAGAATTTGTTTCAGATCAAAGTGAATTAATGGATGAGATGAAGTTAGAGGCAATGCGACAATATTACTATCAAAAGGAAGAAAATAAAATAAATGAGGCCAACAATAATGTGTCACATAATGTTGTTGAAGAACAATGGATTGCTTCATCTTCGTCTGACCTCTATCCTATGCACATTGATTCTTCATCATATTATTGGGAGCAAAGAAACTAG 3021 0.3731 MITTSSKLFFFSSFLALCFMLYPIEATSRLPDTEXXXXXXXXXXXXXKETLEALKQIKKTLGWDLKNIDPCSKGGIISNPVRSTSEIINVSCDCSIAHDNFCHIIAIILSAQNLQGKLPPELVKLPYLQEINLTRNYLSGTIPREWGTMNLTKIALVANGLSGEIPKELANITTLKTLSLEFNNFYGNLSVLGSLPHLEILPSTSTRHCSIRLSPIAESYLFNNFTGELPETFSNLITLKELRLGDNQFSGKIPNFIQKWTGLENLVIQGSGFTGPIPSEISYLLNLEDLRISDLNGPESKFPPLDNMTNLGVLDLSYNKLGGEIPKFLTSLSSIKYIYLTGNILTGQVPADWTAPIDLSYNNFSNSPETVTCQMSNIGPLSCGQSKEKCPKYYYSFHINCGGDSSVQKGRITYESDSYKGVPFKKSTVESSNWAISTTGGDFMDNVHQYDLIQENETKLAIVDDVDLYTKARGSPISLTYYGFCLANGNYTVNLHFAEIVFINGTTYSSLGRRVFDVYIQGERVLKDFNIAKEAKGIGKANIQNFSAYVSNNELEIRLYWAGKGTTGVPYRSQYGPLISAISVTSDSLPEHNHISTRLMAGIVAPTVIVIIILIICLLWWKGCLRKKTSLEKAELRNLDLQTGLFSLHQIKAATNNFNISNKIGEGGFGPVYKGILPNGTIIAVKQLSSKSKQGNREFINEIAMISALQHPCLVKLYGCCVEGDQLLLVYEYMENNSLAYALFGPKENELKLNWPTRQKICVGIARGLAFLHEESRLKIVHRDIKATNVLLDKNLNPKISDFGLAKLHEEDATHISTRIAGTYGYMAPEYAMNGYLTDKADVYSFGIVVLELISGKANTIHRSKEEVLYLLDWAHLLKEKGMLMELVDRRLGSDFNEEEVMVMIQVALLCTNATANLRPSMSSVLSMLEGKTIVPEFVSDQSELMDEMKLEAMRQYYYQKEENKINEANNNVSHNVVEEQWIASSSSDLYPMHIDSSSYYWEQRN 1006
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g01682 1006 SMART serkin_6 658 903 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip08g01682 1006 Pfam Protein tyrosine and serine/threonine kinase 659 927 IPR001245 GO:0004672|GO:0006468
Aip08g01682 1006 Gene3D Transferase(Phosphotransferase) domain 1 734 944 - -
Aip08g01682 1006 Gene3D - 395 589 - -
Aip08g01682 1006 Gene3D Ribonuclease Inhibitor 48 217 IPR032675 -
Aip08g01682 1006 Pfam Malectin domain 396 582 IPR021720 -
Aip08g01682 1006 ProSitePatterns Serine/Threonine protein kinases active-site signature. 780 792 IPR008271 GO:0004672|GO:0006468
Aip08g01682 1006 CDD STKc_IRAK 664 931 - -
Aip08g01682 1006 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 92 314 - -
Aip08g01682 1006 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 384 976 - -
Aip08g01682 1006 SUPERFAMILY L domain-like 91 382 - -
Aip08g01682 1006 Gene3D Phosphorylase Kinase; domain 1 622 733 - -
Aip08g01682 1006 ProSiteProfiles Protein kinase domain profile. 658 939 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip08g01682 1006 Coils Coil 48 60 - -
Aip08g01682 1006 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 92 314 - -
Aip08g01682 1006 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 384 976 - -
Aip08g01682 1006 Gene3D Ribonuclease Inhibitor 219 300 IPR032675 -
Aip08g01682 1006 Gene3D Ribonuclease Inhibitor 301 394 IPR032675 -
Aip08g01682 1006 SUPERFAMILY Protein kinase-like (PK-like) 641 937 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g01682 Aip-Chr8 33855146 33871861 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g01682 76 958 Receptor kinase-like Gene Family AT1G53420 54.348 0.0 927
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Aip08g01682 PK_Tyr_Ser-Thr 1.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g01682 - - gmx:100785451 1140.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g01682 08 33855146 33871861 Aip08g01682 08 33855146 33871861 ECH