Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g01668 ATGGCAAAAGAGCGCTTTGGCTTGGAGACTTGTGTTGCCCTTGCCGCCCGCAGTCACGTCAACCACTGTAGGTACCTCAACCCCGCAGTCCCATCGCGTGTGGAAGTCCGGCGCCGTCGCAGGAGCGTGAGGTCGTCTCCTCTGTTCAAGCGCGCTCTCATTGTGTTCACCGTGCCTCTGTCACCGCCACCGTGCCCCTGTCACCGTCTCGTCTGTTCGTGCTTCCCCCGCCGGCGTGAGGAAACATCACTGGACATTGGCATGGACGAGGCGGCCTTTGGAACAAAATATTTAGATGGTGATGGTGACCTGGGCAATGATGTACGTGGCAGCGGTTTAGCGAGGCCAGAGGAGGTGATGGAGATGTTGTTTAACTCTTCCGACGTGGCTGCTCATTTCTACGAACAGTATAGTCGAGGCAAGGGTTTTGCTACGCGTGTTGGTAAGAAGCTAAGAAATAAGAATGGGGACATCGTGCGATATACATATTTGTGCAATAGAGAAGGGTTTAGGCAAAAGAAGTGGTTGGAGTTGCAAGGTCGAAAGAGAGAACACAAGGTGGTTATGCGATGTGGGTGCATGGCAGAGATGCGTATCAAGCAAAATGGTCAGATGGGTAAATGGTATGTGTCAAGATTTGTAGATGACCACAATCATGAGCTCCTCCCTCCGAAGTTGGTGGAATACTTGCCTCCACATAGGAAGATGTCAGATGTGGACGTAGCCCACATGGATAGCTTACGGCAAGTTGGGATTTTAGTTCCTAAAATATATGAGTCGCTTGCAGCACAGACTGGTGGCTTTGATCATATCCCATTCACAAAGAGAGATATGTACAATGAAATGAGGCGCCAACGAGGCATGAGGAAGGGAGACGTCAATGCAACGATAAGGTACTTTGAGGCAGGTGCGAAAGCAGATGAGAAACTCTTTTGGAGGTGTCAGAAGTTGTTGAAATGCATGGAGGGGAAGGCACTGAAGGCAGTAATAACAGAAGAGTGGGTTCAGGATCTATACATGAAGAAATTATATTGGGCAACTGCATACATACGCGGTAGGTTCTTTGCCGGCATCAGGACGACATCGCGATGTGAATTGTTGCATGCGAAGCTAGGCAGGTTTGTGGAGAGGAGGTATGGGATACTCGACTTTGTGACGAACTTCCAGCGTTGTGTTGAGTTCCTCAGAGATAACGAGGATGAGATGGACTTTCGGTCGTCGTATGGGACCCCCGTATTGCAGACTCAGTTTCCAAAACTTGAGAAATCCGGAGCAATGAAGTATACCCGAGAAATATTTTCAAGGTTCCGTGAATCCTTGCAAAGGTATGTTCGGATAACCGTTGTGGAGAGCCAGCCGCGCGAGGGTGGTACTATTTATGTGACCCAAAAGTATATGCAACCGGGAAGAAAGTGGAATGTTATGCATGTGTTGGCTTTGGATAAATATACGTGCAGTTGCCAAAGAATGGAATCGTTTGGGCTACCTTGTGTGCACATACTCTCAGTTTTGGTTTGGTTAGATGTGGGTTCTCTTCCAGACACCTTGGTCTTGGGGAGGTGGACTAAGTCGGCCAAGTTCGGTTTGTATGATGATATTGCTGGGGAGAAAATAGTCGATATTGCTGCCTTGTATAGGATGCGGATGGGAACGTTTCTGCAGCACCGCGAGTGTTTAGCTCAGCTTGTGTATAACAACGATGACTTATTCAAGTTGTATTCAGAGCAGATAGTTCAGGAAGCAATTAGTCTTGAAAGTATGAATGATTTGGGGAATAGTGTCGGCATTGGTGGTGGTGGCGACAATGGTAGAGTACTAGATCCGATTGGGGTTTGTACTAAGGGCACTGGGCGTGGAAATGTACAGGTTGGGGCGAGGGGAACGAAGCGTAGAAAGTGTAGCACGTGTGGGATAGTCGGACATCGTCGAACTCAGTGCCAAAATCAGGCGAACATGTCGGTGCCGAACAGCCAAGATGAGACTGAATTTTCTCCTGCGCGTAGCCTTTCGATCAAGAATATTGGGGTGTGGGATTGCTATCGTCCATCAGCGGCGAACACTTCCGACTTTCGAGCAACTGCGGATGGGTGTTCCCCAAAGTAA 2103 0.4883 MAKERFGLETCVALAARSHVNHCRYLNPAVPSRVEVRRRRRSVRSSPLFKRALIVFTVPLSPPPCPCHRLVCSCFPRRREETSLDIGMDEAAFGTKYLDGDGDLGNDVRGSGLARPEEVMEMLFNSSDVAAHFYEQYSRGKGFATRVGKKLRNKNGDIVRYTYLCNREGFRQKKWLELQGRKREHKVVMRCGCMAEMRIKQNGQMGKWYVSRFVDDHNHELLPPKLVEYLPPHRKMSDVDVAHMDSLRQVGILVPKIYESLAAQTGGFDHIPFTKRDMYNEMRRQRGMRKGDVNATIRYFEAGAKADEKLFWRCQKLLKCMEGKALKAVITEEWVQDLYMKKLYWATAYIRGRFFAGIRTTSRCELLHAKLGRFVERRYGILDFVTNFQRCVEFLRDNEDEMDFRSSYGTPVLQTQFPKLEKSGAMKYTREIFSRFRESLQRYVRITVVESQPREGGTIYVTQKYMQPGRKWNVMHVLALDKYTCSCQRMESFGLPCVHILSVLVWLDVGSLPDTLVLGRWTKSAKFGLYDDIAGEKIVDIAALYRMRMGTFLQHRECLAQLVYNNDDLFKLYSEQIVQEAISLESMNDLGNSVGIGGGGDNGRVLDPIGVCTKGTGRGNVQVGARGTKRRKCSTCGIVGHRRTQCQNQANMSVPNSQDETEFSPARSLSIKNIGVWDCYRPSAANTSDFRATADGCSPK 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g01668 700 SMART 26again6 483 510 IPR006564 GO:0008270
Aip08g01668 700 ProSiteProfiles Zinc finger SWIM-type profile. 476 508 IPR007527 GO:0008270
Aip08g01668 700 PANTHER PROTEIN FAR1-RELATED SEQUENCE 5-LIKE 332 542 - -
Aip08g01668 700 Pfam FAR1 DNA-binding domain 132 223 IPR004330 -
Aip08g01668 700 PANTHER PROTEIN FAR1-RELATED SEQUENCE 5-LIKE 117 314 - -
Aip08g01668 700 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 332 542 IPR031052 GO:0006355
Aip08g01668 700 Pfam SWIM zinc finger 480 504 IPR007527 GO:0008270
Aip08g01668 700 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 117 314 IPR031052 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g01668 Aip-Chr8 32813476 32818982 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Aip08g01668 FAR1 8.3e-21 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g01668 - - aip:107611839 642.114