Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g01598 ATGAATAATAGGAACACCACTTTCATCACCTTCAACAACAAGAATCGTCCAATAATAAAAGATTCATCGTCTTCATCATCATCATCATCAAGAAGCTATGCCAATGGTGAAGACTACATGATGATGAGTGGTTTTCCATGGCCACCAAGATCATACTCATGCAGCTTCTGTAGAAAAGAGTTCAAGTCAGCACAAGCACTTGGCGGACACATGAATGTTCATAGAAGAGATAGAGCAAGGTTGAGGCATCAATCACCACCTCCATTATCAACTAATCTTCATCATCAAGTTCCTAATCTCAACCTTAATCTTAACCCTATCATTATTACTGCTACTAGTACCTCTAACCCTAATAGTGATAATAACTTGTCATCATACAAAAAACCTTCCACTACTACATTGCCCTTGTTTGTTATGGATGGTGTTTTACTTAGCCCTTTGAGCACAAAACCTAACAACATTCTGGAACAAGTTGAAGGATATGATGGTAATTTCGCAACAAGAGAAGACGAAGAAGGGTGCAAGATCTTGAAGAAAGGTGAGATTCTGAGAGTGGATTTGGAGATAGGGTTGCCTATTCCTTCTACTACTACTACTACTACTAAAAAAGTAGATTATGATTTGGATCTTGAGCTTCGTTTGGGTACTTGCTCTTAA 657 0.382 MNNRNTTFITFNNKNRPIIKDSSSSSSSSSRSYANGEDYMMMSGFPWPPRSYSCSFCRKEFKSAQALGGHMNVHRRDRARLRHQSPPPLSTNLHHQVPNLNLNLNPIIITATSTSNPNSDNNLSSYKKPSTTTLPLFVMDGVLLSPLSTKPNNILEQVEGYDGNFATREDEEGCKILKKGEILRVDLEIGLPIPSTTTTTTKKVDYDLDLELRLGTCS 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g01598 218 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 10 155 - -
Aip08g01598 218 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 138 217 - -
Aip08g01598 218 Pfam C2H2-type zinc finger 52 76 - -
Aip08g01598 218 PANTHER OS07G0101800 PROTEIN 138 217 - -
Aip08g01598 218 PANTHER OS07G0101800 PROTEIN 10 155 - -
Aip08g01598 218 ProSitePatterns Zinc finger C2H2 type domain signature. 54 74 IPR013087 -
Aip08g01598 218 Gene3D Classic Zinc Finger 47 95 - -
Aip08g01598 218 ProSiteProfiles Zinc finger C2H2 type domain profile. 52 79 IPR013087 -
Aip08g01598 218 SMART c2h2final6 52 74 IPR013087 -
Aip08g01598 218 SUPERFAMILY beta-beta-alpha zinc fingers 49 78 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g01598 Aip-Chr8 28827835 28828491 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g01598 37 215 C2H2 Transcription Factor Family AT3G23130 37.745 2.87e-29 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aip08g01598 zf-C2H2_6 3.1e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g01598 - - aip:107610839 394.045