Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g01567 ATGTCGCATCCGGGGAAGCCCGTTACCGAGTTGGATTCGGTCACTGACCGATTCCGTGACTCACTGAGTTGCGAGGCCGCCAGTCGAGACGCTAACAAGCCAGATTTCCGCGAACTCGATCTGGGCTCGCCAGTATCGCCGCTTCGTACGGCTCACCACGCAGTCGGCGCTGCTGGAAACGGAGGACCCGCCGCCAGTAGCAGCTCAAGCTCATCCGGATCCTTCTCGGGTCGAACCAACCCGGTTTCCAGAAGATCCGATTCGGGACACACCAACAGCAACGGCAACAACAACCACTCTGGCGAGCTTTCTGGTTCAAGTGAGAACAGCCCAACCGCAACCGGCGGCGGGAACACTCGGATCCTGAAACCGGGTCAAGCGAGATCTGATTCAATCTATTCAGGTCAGAACGGAGGCTCCTCCTCCTCTTCCTCCTCAGCCGTAAATTCGCCGCCGCTGAACGTCCTCCCCACCGGAAACATCTGTCCCTCCGGTAGGATCTTGAAGACAGGCATGGCGGCGAATCGGAGCTCGAGGAGCGACGTTTTGGGCTCCGGCATGGGGAATTACGGCCACGGAAGCATAATTCGCGGCGGCGGAAAGAGCGGCAGCAGCACGCCTGATTCGCCAGGGATCCCAAGCGTGCGGTCGAGCAGCGGCATTGGCGGCGAAGGCAATGTGGCGAAGAGGGGAGCGACGCAGGGTTCGGATCCGGAGGAGCTGAAGAGAGCTGGGAATGAGCATTACAAGAGGGGCCACTTCGCCGAGGCATTAGGGTTATATGATCGGGCAATTGCGCTTTCTCCGGCAAGTGCCGCCTACCGGAGCAACCGTGCCGCGGCCCTTACGGGTCTTGGGAGGCTAGGTGAGGCTGTGAGGGAGTGTGAAGAGGCTGTGAGGTTGGATCCTAATTATGGCAGGGCTCATCATCGCTTGGCATCTCTTTTCTTAAGGTTGGGGCAAGTTGAGAATGCAAGGAAGCACCTTTGTTACCCTGGGATGCATCTGGATCCGTGTGAGATGCACAAGTTGCAATTGGTTGAAAAGCATATTGCCAAATGCGGAGATGTAAGGAGGATTAGGGATTGGGAAAGTGTTGTTAGAGAACTCTTTATGTGTAGAGCAGAAGCACTGTTGAAGTTACACCAAATTGACGATGCAGAATCAATTTCGATACATGTACCCAAATCGGAGCCACTTACTATTTCCTCTTCTCAAGCTAAATTTTTTGGAATGCTTTCTGAAGCTTATGTGTATTTCGTCAGAGCTCAGATTGAGATGGCATTGGGAAGGTTTGAGAATGCAGTTAAAGCAGCCGAGAAAGCCAGTCAAATGGACCCCCGGAACGTTGAAGTTGCTGTTTTGGTCAACAATGTGAGGATGGTGGCGAGAGCTCGAGTGCGTGGCAATGATCTTTTCAAATCAGAAAGGTTTACCGAAGCTTGCTCCGCATATGGAGATGGTTTGAGGCTTGATCCTTCAAATTCGGTTCTATATTGCAACAGAGCAGCTTGTTGGTTTAAGCTTGGGCAATGGGAAAGATCAATTGAAGACTCCAATCATGCTTTGAAAATCCAACCTAACTACACTAAAGCTCTTCTTCGAAGGGCCGCATCAAACAGTAAGCTTGAAAGGTGGGAAGAGGCAGTCAAGGACTATGAGGTCTTGCGGAAAGAACTTCCAAATAACAATGAAGTTGCCGAAGCTCTTTTCCACGCACAAGTTGCATTGAAAAAATCTCGTGGGGAAGAAGTATATAATTTAAAATTCGGCGGTGAAGTGGAACAGGTGTCGGGTCTTGAGCAGTTTAGAGCTGCAATAACTTTACCAGGTGTTTCTGTTGTCCATTTTGAAATTGCATCTAACTCGCAATGCAAGCAAATATCGCCCTTTGTGGATACACTATGTGGTCGATATCCATCCATCAACTTCCTCAAGGTGGATATTCAAGAAAACCCAACCGTTGCAACTGCCGAGAATGTTAGGATCGTACCGACCTTCAAGATATACAAAAACGGCAGCCGAGTGAAGGAAATCGTGTGCCCCAGTCGCGATATGTTGGAACATTCCGTGAGGCATTACAGTTTTTAG 2091 0.5088 MSHPGKPVTELDSVTDRFRDSLSCEAASRDANKPDFRELDLGSPVSPLRTAHHAVGAAGNGGPAASSSSSSSGSFSGRTNPVSRRSDSGHTNSNGNNNHSGELSGSSENSPTATGGGNTRILKPGQARSDSIYSGQNGGSSSSSSSAVNSPPLNVLPTGNICPSGRILKTGMAANRSSRSDVLGSGMGNYGHGSIIRGGGKSGSSTPDSPGIPSVRSSSGIGGEGNVAKRGATQGSDPEELKRAGNEHYKRGHFAEALGLYDRAIALSPASAAYRSNRAAALTGLGRLGEAVRECEEAVRLDPNYGRAHHRLASLFLRLGQVENARKHLCYPGMHLDPCEMHKLQLVEKHIAKCGDVRRIRDWESVVRELFMCRAEALLKLHQIDDAESISIHVPKSEPLTISSSQAKFFGMLSEAYVYFVRAQIEMALGRFENAVKAAEKASQMDPRNVEVAVLVNNVRMVARARVRGNDLFKSERFTEACSAYGDGLRLDPSNSVLYCNRAACWFKLGQWERSIEDSNHALKIQPNYTKALLRRAASNSKLERWEEAVKDYEVLRKELPNNNEVAEALFHAQVALKKSRGEEVYNLKFGGEVEQVSGLEQFRAAITLPGVSVVHFEIASNSQCKQISPFVDTLCGRYPSINFLKVDIQENPTVATAENVRIVPTFKIYKNGSRVKEIVCPSRDMLEHSVRHYSF 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g01567 696 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 11 694 IPR044534 -
Aip08g01567 696 MobiDBLite consensus disorder prediction 25 160 - -
Aip08g01567 696 Pfam Tetratricopeptide repeat 417 449 IPR019734 GO:0005515
Aip08g01567 696 Gene3D Tetratricopeptide repeat domain 236 582 IPR011990 GO:0005515
Aip08g01567 696 MobiDBLite consensus disorder prediction 199 221 - -
Aip08g01567 696 Gene3D Glutaredoxin 589 695 - -
Aip08g01567 696 Coils Coil 422 442 - -
Aip08g01567 696 MobiDBLite consensus disorder prediction 172 240 - -
Aip08g01567 696 Pfam Thioredoxin 603 687 IPR013766 -
Aip08g01567 696 CDD TRX_family 601 688 - -
Aip08g01567 696 MobiDBLite consensus disorder prediction 62 119 - -
Aip08g01567 696 ProSiteProfiles TPR repeat profile. 416 449 IPR019734 GO:0005515
Aip08g01567 696 SUPERFAMILY TPR-like 237 451 IPR011990 GO:0005515
Aip08g01567 696 ProSiteProfiles TPR repeat profile. 496 529 IPR019734 GO:0005515
Aip08g01567 696 SUPERFAMILY Thioredoxin-like 499 694 IPR036249 -
Aip08g01567 696 Pfam Tetratricopeptide repeat 532 562 IPR019734 GO:0005515
Aip08g01567 696 ProSiteProfiles TPR repeat profile. 238 271 IPR019734 GO:0005515
Aip08g01567 696 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN TTL1 11 694 - -
Aip08g01567 696 MobiDBLite consensus disorder prediction 129 157 - -
Aip08g01567 696 SMART tpr_5 530 563 IPR019734 GO:0005515
Aip08g01567 696 SMART tpr_5 238 271 IPR019734 GO:0005515
Aip08g01567 696 SMART tpr_5 416 449 IPR019734 GO:0005515
Aip08g01567 696 SMART tpr_5 462 495 IPR019734 GO:0005515
Aip08g01567 696 SMART tpr_5 496 529 IPR019734 GO:0005515
Aip08g01567 696 SMART tpr_5 272 305 IPR019734 GO:0005515
Aip08g01567 696 Pfam Tetratricopeptide repeat 244 304 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g01567 Aip-Chr8 27343619 27346376 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g01567 461 606 U-box Gene Family AT3G07370 28.415 3.49e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g01567 - - adu:107459775 1220.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g01567 08 27343619 27346376 Aip08g01567 08 27343619 27346376 ECH