Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g01560 ATGGAAGGCTTATGCGAGGAGGGATCTAATGAAGAAAGACAGATTTTTACTGAGGTCTTTTCCAGTAATGGCATTTTTCAGTCTAGTCAGAGGTGTCTTGTTTCTGGAGTTATCAACTTTGAATGTGAATCTGCAAAAAACACTTTCAAATCATTCTGCTCTAGTAATGAAGTTTCAGCTGTACTGCGCTCCTCATCTTCAAGATTTAAACATCCCGAGGAGGACCTTAATGCCATTCAAGATTCCAAAGAGACTGCTTTGGGGTGTGTGCCAAAGAGTTTCACATGTGAAGATGATCAAAATGACGAGGAAATGAATGTCAAGCGAATGAAGTTTTCTTTACATGAAACTCCTAGTGGTAGATCTGATTCAGAAAATGTTTTGAATCCATCAGAACTTTCAAAAGATACAGTTTCTAACTTATCTCATGCTGACTGTGATAGTGAACCCATTGCTTTTCATTTAGTTGAATCATCCAAGTGTGGTGTGATATCTAGTAGCTATCTGTTGAAGCATAATGTGTTACAGAGCAAACCAGCGGCTAAGGGTGATGTAGATGCTACAAAATGTAAATCAGCAACTGCAGACAGTAATGTTGCAAAAGAGGTGATTGTAGGTAAGGCAATTGCTTCTCCTGCTTCCCAGGAGAGCTTTGCAAACAGGCTTGTGGTTACGACATCATCAATCAGTGCTGTGAATCCTTTACATCCTGAAGAAATGTCAAAAGACTTCATATCTTCTGACATGGATATTTCAGATTCATTATCAAAGCTGGACAAAAAGGATCCTCGTACTTTGCTGCAGTTTCATATTTTGCAGTTGCTTACAGCAGCAGGATGGTCAGTTGAGAAGCGTAAACGCCCTAGTAGGCGATACATTGAGTCTGTTTATAGGACTCCAAAAGGAAAAACTGTCCGGGAATTTACGAAAGCTTGGAGATTATGCGGTCAGCTTCTGTCTGTTGAAAAATGTAATTTAGCATATGAAGAATGTAAGGAATGGAGTGATATTAGTCAATTTTGGTCTGATTTGTCCATTGCACTGATAAATGTTGAAAAAGGAATGAACCAGTTAGAGACTGCTTCTATGTTGGCTTATCAATGGTGGCTTTTGGATCCTTTTGTAGTAGTAATTTTTTTTAATAGAAAGATTGGTGCGCTGAAAAAGGGAGAAGTAATCAAATCAACTCGAACTTTAGTTTCGGGTAACAGTGCTCGTAAACGGAAATCAGATGAAGATATATATGTTGTAGCAAATCCCAGCAGCATAGAAAATCATTGTAGAAAAATCTCTGTAAACAGAAGCAGTATGGATCTAGTTTTCTCACCTGGTTATGGATTAGATAGCAGTGGCACTCAGCAAAGTGCTTGCTCTTTTGATATTCTTACAAGTTCGGGAAATTCAATACAGATGCTTGAAGGGTCTAAAGTAAATGATGTTCACCAGGCTAACGTTGGAAATTCTCAAAGGGTTGATGAAGATAATGGGATTGAGGGAGATGTACTATTGGAAATGTCACAGGAAAAGAATGCATCTGAATTAAGCCATGCCCTGGTTCATTTTCATGACTCTGAGGCTATTCAACAGTCTAATTATAGTGATGGAGAGGGCAGGAAAATCTCAACAGCTTCTGTATCTGAGACGGATAAGACATGCTCTGCCACTAGTGTTATTCTTAAGAAGAAAATGAGGAGGAGGTGCAAAAGGGTATCTCAGATCAAACTGAGTATGTTATACCGTAGTGACATGGTGGGCTCAACTGTTACTGAGCAGATGCAATCACTGAATGGTGGTCCAAGTGGAACTCAGTTTGGGTTGGAAGAGGCTCACGATAATCTAGTAGACGATTCAGGAACAAAAAGAAGCTGCAGGAAGTTATCATCTGTCGGTGCATCCCAGCATATTAGGAAACCAAACTACTCCATAAATGGAATGAATAAGTCCAGTAGATGCCGGATTAAAGATGATGATCTGTTGGTCTCAGCAATATTCAAGAACAAGGATTCTGGCCAAAATATGATTCGGGGCAATTCTAAAGCAAAATCTGGCAAATTGAGAGGCCGGAGAAATCTTAAAAGCCAAAAGGGCAGATGTCGGTTGCTACCAAGGAATCTTTGCAATGCAGGGAATCACAATAAGGATGGCAAGAGGTATTATTTGGGGTCAAGGACAGTCTTGTCCTGGTTGATTGAGAATGGTGTGATATCTATAAATGATGTGATTCAATACCGAAGCCCTAAAGATGATGTTGTCATTAAGGATGGTAGGATTACCAAGGATGGTGTTGTGTGCAAGTGTTGTTCTAATGTGTTTACATTATCAGAGTTCAAATTTCATGCTGGTTTTGCACTGAATCGTCCCTGCTTGAATCTTTTCATGGAGTCTGGTGAGCCGTTTACACTGTGCCTCCTTCAAGCTTGGTCTTCTGAGTACAAAGCCAGGAAAAGTCAGAATCAGGCTGTGAAAGTTGATAATGATGATAGAAATGATGACTCATGCGGCCTATGTGGGGAGGGGGGTGAGCTGATTTGTTGTGATAACTGTCCGTCTACTTTTCATCTGACTTGTTTGTCCACTCAGGAGATCCCTGATGGCAACTGGTACTGCACAAATTGCACTTGTCGGATATGTGGAAATTTGGTCATGGACAAGGAGGCTTCAGATGGGTATGATTCATTGCAATGTTCACAATGTGAACATAAATATCATGATAAATGCCTGAAAGAAAGAGATAAACAAGAAGGCTTTCTTCCAGATACTTGGTTTTGTGGTCAGAGTTGTCAGGAGGTATACTCTGGTCTCCAATCTCAAGTGGGGTTAGTTAATCATGTTTCCAATGGCTTCTCATGGATGCTTCTTAGATGCATCCATGATGACCAAAAGGTTCATTCTACCCAGTGGTTAGCCCTGAAGGCGGTGTGCAATACTAAGTTAGCTGTAGCGCTTACTATCATGGAGGAGTGTTTTTTGTCGATGTTGGATCCAAGAACAGGCATACACATGATACCCCAACTATTATACAACTGGGGGTCTGATTTTGCTCGCCTGAATTTTCAAGGGTTTTACACTGTGGTATTGGAAAAGCAGGATGTGTTAACATCTGTAGCATGTATTAGGGTGCATGGAACTACAGTTGCTGAGATGCCTCTCATTGCAACTTGCAGTCGGTTTCGTCGGCAAGGAATGTGCCGACTCCTTGTGAGTTCAATTGAAGAGATGCTAACATCTGTCAAGGTAGAGAAGCTTGTGGTAGCAGCAATTCCAGATTTGGTTGAGACATGGACCAAAGGATTTGGATTCACACCTGTGGATGCCGCCGAAAAGCAGAAGTTCAACAAAATCAACTTCATGGTTTTTCCTGGAACAGTGTTACTTGAAAAACCCTTGTACAAGAAGGAAAGACCCGAAGGAATCTGTTATGCATCAATGATGGCAGCAAATGAACCAACCAAAGTAGGTATCAGTACCGAAGACATGGCCCTGGATAAATCAGCACTAGAAGATGTTGGAGACATTGCTACTGACGACGTGGGTGCTGATAAGTCAGAGACTGAACTTGAAGGTAAGAATCACAGAGACACCATTGCTGACAGGGAAACCAGCAGAGATGATAACACTCAAGCCATCAACAACGACGACACTGGATTAGACGCCACAAAATCAACAGAAATTAGTAGCTGTTTTGGAGCAGAGATCATCCCGGTAATGGTCTCGGACAAGTCTGATAAATTGTGCGGCGGAGACAGCATGCTCGAACTGAGAACGAGCAGCGAAATCCAAACGGTGTGTAAGTTGGGACAGCAATCAAGTGAGGACTGTAATGTAAAGAAAGACGGTGCTGAATCAGGTGTATTAGTTATTGAGGAAAAGGATGTCAAAGTAGGTGAAGTTCAGGAAAATGCAAATGTGCAGGGTAATTTTTCAAATTTGTCCTGTAAAACATTCGTGGGCAGCAATTTTGACATTGATTCTAGTATTGAACGATCAGGTGAAACTGCTCTTTTTGGAACATTTGCAAAGTCTGCAAGTTGA 4032 0.411 MEGLCEEGSNEERQIFTEVFSSNGIFQSSQRCLVSGVINFECESAKNTFKSFCSSNEVSAVLRSSSSRFKHPEEDLNAIQDSKETALGCVPKSFTCEDDQNDEEMNVKRMKFSLHETPSGRSDSENVLNPSELSKDTVSNLSHADCDSEPIAFHLVESSKCGVISSSYLLKHNVLQSKPAAKGDVDATKCKSATADSNVAKEVIVGKAIASPASQESFANRLVVTTSSISAVNPLHPEEMSKDFISSDMDISDSLSKLDKKDPRTLLQFHILQLLTAAGWSVEKRKRPSRRYIESVYRTPKGKTVREFTKAWRLCGQLLSVEKCNLAYEECKEWSDISQFWSDLSIALINVEKGMNQLETASMLAYQWWLLDPFVVVIFFNRKIGALKKGEVIKSTRTLVSGNSARKRKSDEDIYVVANPSSIENHCRKISVNRSSMDLVFSPGYGLDSSGTQQSACSFDILTSSGNSIQMLEGSKVNDVHQANVGNSQRVDEDNGIEGDVLLEMSQEKNASELSHALVHFHDSEAIQQSNYSDGEGRKISTASVSETDKTCSATSVILKKKMRRRCKRVSQIKLSMLYRSDMVGSTVTEQMQSLNGGPSGTQFGLEEAHDNLVDDSGTKRSCRKLSSVGASQHIRKPNYSINGMNKSSRCRIKDDDLLVSAIFKNKDSGQNMIRGNSKAKSGKLRGRRNLKSQKGRCRLLPRNLCNAGNHNKDGKRYYLGSRTVLSWLIENGVISINDVIQYRSPKDDVVIKDGRITKDGVVCKCCSNVFTLSEFKFHAGFALNRPCLNLFMESGEPFTLCLLQAWSSEYKARKSQNQAVKVDNDDRNDDSCGLCGEGGELICCDNCPSTFHLTCLSTQEIPDGNWYCTNCTCRICGNLVMDKEASDGYDSLQCSQCEHKYHDKCLKERDKQEGFLPDTWFCGQSCQEVYSGLQSQVGLVNHVSNGFSWMLLRCIHDDQKVHSTQWLALKAVCNTKLAVALTIMEECFLSMLDPRTGIHMIPQLLYNWGSDFARLNFQGFYTVVLEKQDVLTSVACIRVHGTTVAEMPLIATCSRFRRQGMCRLLVSSIEEMLTSVKVEKLVVAAIPDLVETWTKGFGFTPVDAAEKQKFNKINFMVFPGTVLLEKPLYKKERPEGICYASMMAANEPTKVGISTEDMALDKSALEDVGDIATDDVGADKSETELEGKNHRDTIADRETSRDDNTQAINNDDTGLDATKSTEISSCFGAEIIPVMVSDKSDKLCGGDSMLELRTSSEIQTVCKLGQQSSEDCNVKKDGAESGVLVIEEKDVKVGEVQENANVQGNFSNLSCKTFVGSNFDIDSSIERSGETALFGTFAKSAS 1343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g01560 1343 Pfam PHD-finger 833 874 IPR019787 -
Aip08g01560 1343 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 980 1104 IPR016181 -
Aip08g01560 1343 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 823 874 IPR013083 -
Aip08g01560 1343 PANTHER PHD FINGER PROTEIN 12 2 433 IPR042163 GO:0003714|GO:0045892
Aip08g01560 1343 PANTHER PHD FINGER PROTEIN 12 465 1340 IPR042163 GO:0003714|GO:0045892
Aip08g01560 1343 ProSiteProfiles Zinc finger PHD-type profile. 830 875 IPR019787 -
Aip08g01560 1343 Pfam Tify domain binding domain 755 805 IPR032308 -
Aip08g01560 1343 SUPERFAMILY FYVE/PHD zinc finger 819 873 IPR011011 -
Aip08g01560 1343 MobiDBLite consensus disorder prediction 1180 1206 - -
Aip08g01560 1343 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 875 931 IPR013083 -
Aip08g01560 1343 SMART PHD_3 832 873 IPR001965 -
Aip08g01560 1343 SMART PHD_3 874 928 IPR001965 -
Aip08g01560 1343 PANTHER INCREASED DNA METHYLATION 1 2 433 - -
Aip08g01560 1343 PANTHER INCREASED DNA METHYLATION 1 465 1340 - -
Aip08g01560 1343 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 968 1130 IPR000182 GO:0016407
Aip08g01560 1343 MobiDBLite consensus disorder prediction 1180 1216 - -
Aip08g01560 1343 CDD PHD2_CHD_II 832 872 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g01560 Aip-Chr8 27044948 27053898 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g01560 1 1141 PHD Transcription Factor Family AT3G14980 40.878 0.0 808
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Aip08g01560 TDBD 2.1e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g01560 - - adu:107459718 2618.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g01560 08 27044948 27053898 Aip08g01560 08 27044948 27053898 ECH