Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g01558 ATGAGTTGTTTCTCTCTTCTTTGTGGAAGAAAGGGGTCTTCTTCGGCGGCGCAACCAACCGAAGCTGATATAGATCTTTCTAGCTTTAAGAACATCAATCTCTACACATACAAGGAATTGCAAATTGCCACAGAAAATTTTAGTCCTGCAAATAAGATAGGGGAGGGAGGTTTCGGATCGGTATATAAGGGAAAGTTGAGAGATGGTACTCTGGCTGCTATTAAGGTTTTGTCAGCTGAATCTAAACAAGGAGTCAAAGAGTTCTTGACGGAAATCGAGGTGATTTCTAGTATAGAGCATGAGAATCTAGTTAAGTTGTATGGTTGCTGTGTGGAAAGGAACCAGAGGATTTTGGTATATGGCTATCTTGAGAATAACAGCCTAGCACAAACACTTGGTGGTAGAGGCCATAGTAGCTTGTACTTAAGCTGGCATACACGGAGGAACATTTGCATCTGCGTTGCGCGGGGTCTTGCATTTCTTCATCATGAAGTTGAGCCACATATTATCCATAGAGACATTAAAGCTAGCAATATATTACTCGACAAAGACTTGCAGCCCAAAATTTCGGATTTTGGTCTAGCAAGGCTTATTCCAGCAAACATTACCCATATTAGTACACTTGTTGCTGGCACAGCTGGCTATCTAGCACCTGAATATGCGATACGAAGTCAAGTGACAAGAAAATCAGATGTCTACAGTTTTGGAGTTCTGCTATTAGAAATTGTTAGCGGAAGGTGTAACACAAATAGACGTTTACCTGCAAAAGAAAGGTATCTACACACAAGGGCTTGGGATTTGTATGAGAGGGGGGAGCTGGAGAGTTTGGTTGATTCCTCGCTCGCCGGCGACTTTGATGTCGAGGAGGCGATAAGGTTTTGCAAGATTGGTCTCATTTGTATTCAGGATTCTCTTCAGCTCCGGCCTTCAATGTCCACCGTGCACGACATGCTGATAGGCAAAACGGATGTCAATGAGAAGATGATGTCAAAACCAGGCTTACTATTTGAGTTTGTGGAAACGAAAGATCAAGGAAAACAGAAAGACAAGGTTGAAGAAATTGAAGTGGAAAATACATCTTTGATGGCTATGACTAGTTCAGAGAGGAAAGATGATTTGGAAAGTTCATCTTTTTCAGGAAGCACAGGATCTTATGCTACAATGACCTTCACTTCAATTTATGATAGATGA 1191 0.4165 MSCFSLLCGRKGSSSAAQPTEADIDLSSFKNINLYTYKELQIATENFSPANKIGEGGFGSVYKGKLRDGTLAAIKVLSAESKQGVKEFLTEIEVISSIEHENLVKLYGCCVERNQRILVYGYLENNSLAQTLGGRGHSSLYLSWHTRRNICICVARGLAFLHHEVEPHIIHRDIKASNILLDKDLQPKISDFGLARLIPANITHISTLVAGTAGYLAPEYAIRSQVTRKSDVYSFGVLLLEIVSGRCNTNRRLPAKERYLHTRAWDLYERGELESLVDSSLAGDFDVEEAIRFCKIGLICIQDSLQLRPSMSTVHDMLIGKTDVNEKMMSKPGLLFEFVETKDQGKQKDKVEEIEVENTSLMAMTSSERKDDLESSSFSGSTGSYATMTFTSIYDR 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g01558 396 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 3 355 - -
Aip08g01558 396 SUPERFAMILY Protein kinase-like (PK-like) 26 319 IPR011009 -
Aip08g01558 396 Gene3D Phosphorylase Kinase; domain 1 18 122 - -
Aip08g01558 396 ProSitePatterns Serine/Threonine protein kinases active-site signature. 169 181 IPR008271 GO:0004672|GO:0006468
Aip08g01558 396 Pfam Protein kinase domain 50 248 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip08g01558 396 ProSiteProfiles Protein kinase domain profile. 47 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip08g01558 396 Gene3D Transferase(Phosphotransferase) domain 1 123 331 - -
Aip08g01558 396 CDD STKc_IRAK 53 318 - -
Aip08g01558 396 MobiDBLite consensus disorder prediction 363 385 - -
Aip08g01558 396 PANTHER RECEPTOR-LIKE KINASE 3 355 - -
Aip08g01558 396 SMART serkin_6 47 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip08g01558 396 ProSitePatterns Protein kinases ATP-binding region signature. 53 75 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g01558 Aip-Chr8 26895893 26898608 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g01558 35 332 Receptor kinase-like Gene Family AT1G07650 55.853 5.37e-104 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Aip08g01558 Pkinase 2.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g01558 - - adu:107459855 761.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g01558 08 26895893 26898608 Aip08g01558 08 26895893 26898608 ECH