Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g01554 ATGATTCACAATGGAGTCTGTAACCTCCGCACCTGCCTCCGTCTCCCGGAGACCTCGCTTTCTCGATCACCACCGCTTTCCCTCGCTCTTCGCCGGCGATACCTTGCCGGCGCTTCCGCCGCCGCCAAGAAGGAGAAAGAGAAGGTGATAGTCATTTCCGGACCCACCGGTACCGGCAAGAGCCGCCTGGCTCTTGAGCTCGCCAAGCGCCTCAACGGGGAAATAGTCAGTGCCGACTCTATCCAGGTATATCGGGGTCTTGATATTGGATCTGCAAAGCCTTCCCAAAATGATAGAAAGGAGGTACCACATCATCTGGTTGACATACTGCATCCATCTGAAGACTATTCTGTTGGACAGTTTTTCGAGGATGCAAGGCAAGCTACAAGATCTATTCTTGACAAAGGGCGTGTTCCCATAGTTGTCGGGGGCACTGGACTGTATTTAAGATGGTTCATATATGGAAAGCCAGATGTGCCTATAGCTTCTCCGGAGATTGCATCCAAAGTACATCTAGAGTTGGCTGAACTACAGAGAAAAGAAGAATGGGATGCAGCTGTGCAATTGGTTGTAAAAGCCGGTGATCCGAAGGCCCAACTTTTACCAGTGAATGATTGGTATCGCTTACGGCGTAGCCTGGAAATTATTAAGTCCAGTGGGTCACCTCCTTCTGCTTTTCGGGTACCATATGATTCTTTCAGGAAACAGGATGACTTTAGTGTTATTGATGGTTCTGAGTCATCTAGGGCAAACACAACAGAAGAAACCAATATGTCAGATTTGGACTACGAGTTTATGTGTTTTTTCCTTTCTGTCCAAAGACTTGACCTCTATAAATCACTTGATTATCGGTGTGAAGAAATGCTATTAGGAAGGGATGGGATTCTATCTGAGGCTCAGTGGCTTCTTAATTTGGGTCTTCTTCCAAATTCGAATTCTGCAACACGAGGAATTGGTTACAGACAAGCCATGGAGTACTTATTAAGTTGCAGAAAGCTAAATGGTCAGAGTTCAGTAGGAGAATTTTACAAGTTCTTATCTGAATTTCAAAAAGTATCACGGAATTTTGCGAAGAGACAGCTGACATGGTTTCGAAATGAAAAAATATATGACTGGCTTGATGCTTCTAAACCTCTGGAAACAGTACTCAACTTCATTGTTGATTCATACCAGAACAGGAGCGGAAGGCTTGTTGTGCCCGAGAATCTAAGAATGCCACGAGATATTTCTAATCACCGAGAAGCTAATTTAATTAAGTCCTACAGAACCAGAAATAGGCATTTTTTGAAGCGGGAAGATTCTTCTCATATTCTGGACTGGATAGGGGAGACCCAAAGTGGGATACGAAGACTGGAAAATCCAAGAGAGGCAAATTACGAGAGAGTCTGA 1389 0.4478 MIHNGVCNLRTCLRLPETSLSRSPPLSLALRRRYLAGASAAAKKEKEKVIVISGPTGTGKSRLALELAKRLNGEIVSADSIQVYRGLDIGSAKPSQNDRKEVPHHLVDILHPSEDYSVGQFFEDARQATRSILDKGRVPIVVGGTGLYLRWFIYGKPDVPIASPEIASKVHLELAELQRKEEWDAAVQLVVKAGDPKAQLLPVNDWYRLRRSLEIIKSSGSPPSAFRVPYDSFRKQDDFSVIDGSESSRANTTEETNMSDLDYEFMCFFLSVQRLDLYKSLDYRCEEMLLGRDGILSEAQWLLNLGLLPNSNSATRGIGYRQAMEYLLSCRKLNGQSSVGEFYKFLSEFQKVSRNFAKRQLTWFRNEKIYDWLDASKPLETVLNFIVDSYQNRSGRLVVPENLRMPRDISNHREANLIKSYRTRNRHFLKREDSSHILDWIGETQSGIRRLENPREANYERV 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g01554 462 TIGRFAM miaA: tRNA dimethylallyltransferase 49 226 IPR018022 GO:0008033
Aip08g01554 462 CDD NK 49 90 - -
Aip08g01554 462 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 9 39 446 - -
Aip08g01554 462 Hamap tRNA dimethylallyltransferase [miaA]. 49 384 IPR018022 GO:0008033
Aip08g01554 462 Pfam IPP transferase 82 367 - -
Aip08g01554 462 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 49 208 IPR027417 -
Aip08g01554 462 Gene3D - 46 433 IPR027417 -
Aip08g01554 462 Gene3D - 158 228 - -
Aip08g01554 462 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 39 446 IPR039657 -
Aip08g01554 462 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 45 285 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g01554 Aip-Chr8 26808649 26815441 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g01554 52 369 C2H2 Transcription Factor Family AT2G27760 25.982 8.48e-19 86.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g01554 K00791 - gmx:100808814 650.973
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g01554 08 26808649 26815441 Aip08g01554 08 26808649 26815441 ECH