Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g01527 ATGCATAAATTTGTTCCTCTCGTTTGTCTTATTAGTATGAATATGGTTAAAATAGTGTTAGGAACAGCAACAAAATTTCATGAGGGTGATGCTAGCATGGATGTGAAAAAGGGCATAGTAGGAGTTGTTGCAGACTATAATGATGGAAGTGGAAAAGAGGAAATAGTGGCTATTAAGATGGCATTGGAGGATTTCTATCATTACACCAATCGAAGCTTTGGTCTTCACATAAGGGACTCTCATGGGGATCCCCTTAAAGCTGCTCTTGCAGCAAGGGACCTTATTGACAAAGAGCAAGTGCAAGCAATTATAGGTCCACAAACGTGGGAAGAAACAACATTAATAGCTGAACTTTGCAACCAAAACATGACACCTCTTCTATCCCTAGCAGATGTAACTCCAAATTGGGCAACATCAAAATGGCCCTTCATGGTTCAAACTTCACCTAATGCATTAAAACAAATGAAAGCAATATCTGCTATTGTTCAATCATGGGATTGGTACAGTGTCAACATAATTTATGAAGACAAAGATGCTTCATCCACAGAATCTTTATCCAATATCTATTTAGCACTCACTGAAGCAGGTATCACAATAAGTAATCTCTTGAGTGTTCCTCCTTTTCCTTCCTCTTCACTGTCCAAAGATCTTGAGAATCTTAGAGAAGGCCATTGTAGAGTCTTTGTTGTTAGTTTGTCCCTCAATTTGGCCATAAACCTCTTCGAAACTGCGTCAAAAATGGATATGGTTGGGAAGGACTATGTTTGGATCATTACTGACCCTTTTACAAGCCTTGTTCATTCCTTAAATGCTTCAACTATCTCGTCAATGCAAGGAATCATTGGAGTCAAGAGCTATTTCCAAGAAAATAGGAAAAAACATGAGGATTTCTACCGGAAATTTCGTCGAAAATTTAGCCTAGATTACCCGCAAGAACTCAACAATGAGCCAGGAACTTTTGCAGCACATGCTTATGATGCTGCATGGACTCTGGCTCTAGCCATGAGTCAAACCAACAATAATGAAGGTGGCAAATTCCTGATGAACAAGATTTTGCATAGTAATTTTCTTGGCCTAAAGGGAAGAATTCAATTCAATGATCATACCTTAGATCCTACACAGACTTTTCAAATCATCAATGTGATTGGGAAGGGATACAAGGAGATTGGTTTTTGGTCAAATGGACTTGGATTTTCAAGCAATATTGGTCAACATGATGTTAGTTATAGTTCTTCAATGAAGGAACTAGGACAGGTTATGTGGCCAGGTAGACCTTGGGAAACTCCAAGAGGGTGGGCCCTACCAACAATTGAGAAGCCATTAAGAGTTGGGGTCCCTGCTTTGTCCACATTGAAACAATTTATAAACATAACTCATGATCAATTCCAGGGATTCACTATTGATCTTTTCAAAGCAACTATGGACTTGATGCCCTACCATGTTCCATACAAGTTCTATGCTTTCAATGATACTTATGATGAGTTGGTGAGGCAAATTTATTTGAAGAATTTTGATGCAGTAATTGATGTAACAATAATCTCGTACCGGTACCAGTATGCCGAATTCACTCAGCCATACACTGATCCTGGAGTGGTGATGGTAGTCCCTTTGAAATCAAAAACAGGACACAGAGCTTGGCTGTTTGTGAAGCCTTTCACAAAGACAATGTGGATCCTAATAGTGTTAGTGATTATCTACAATGTCTTTGTTTTATGGATGCTAGAAAGAAAGCATTTCTGTGAACTCAAGGGCTCCATACTCAAACAATATGGCAACATTGCTTGGTTGGCAATGACCCCTCTCGTAAACTTAAATGGAGATAAATTACACAACAATTTATCAAGGGTGGCTATGGTGGTGTGGTTGTTTGTGGCCCTCATTATAATGCAGACATACACAGCCAACTTAACCAGCATGCTAACAGTTGAAAGACTTGAACCAACAATAGGTGATGTTGATCAGTTAAGAAATAACAATGCCATGGTTGGATACAGTACTGGATCTTTCTTGAAAAATTATCTTCATGATGTTCTACACTTTAACCCTGCAAACATAAGGCAATTTAGATCACATGAAGAGTTCGCTGAAGCTCTCAGAAGAAAAGAAATAGCAGCTGTCTTTATTGAAGTTCCTGGGGCCAAGATTTTCCTTGCAAAGTACTGTAAAGAGTTTATTCAAGCCGGGCCGATGTATAAAATCGGAGGATTTGGTTTCGCTTTTCCGCAAGGATCTCCATACCTTCCACTTGTGAACAAAGCACTGTTGGATTTGTTTGAATCCGGAAAACAGAGGGAACTGGAGAACAGAATGCTTGCATCAGAGAAATGTGAAGAGTCTGAACCGGACGGCGAAACTGCGAGTCTTAGCCCAAACAGCTTCTGGGCCTTATTCACTTTGACAGCAGGTACATCAACAATTGCCCTCTTGATTTATGTCACCGGCACCAATGGTTCGAACCATGATCAGAAGACTATCGGGTGGTTAACCTCGGCGGTGATTGAACAATGGGGACAAGCCAAGAGACGACTCTCAAGAAAAGATAGTCATGTTGCAGAAAGTCCTGTGAACTCTCCAGATTCAGATTCACATGTTATGCAACGTCCTCAAGCTTGA 2613 0.4007 MHKFVPLVCLISMNMVKIVLGTATKFHEGDASMDVKKGIVGVVADYNDGSGKEEIVAIKMALEDFYHYTNRSFGLHIRDSHGDPLKAALAARDLIDKEQVQAIIGPQTWEETTLIAELCNQNMTPLLSLADVTPNWATSKWPFMVQTSPNALKQMKAISAIVQSWDWYSVNIIYEDKDASSTESLSNIYLALTEAGITISNLLSVPPFPSSSLSKDLENLREGHCRVFVVSLSLNLAINLFETASKMDMVGKDYVWIITDPFTSLVHSLNASTISSMQGIIGVKSYFQENRKKHEDFYRKFRRKFSLDYPQELNNEPGTFAAHAYDAAWTLALAMSQTNNNEGGKFLMNKILHSNFLGLKGRIQFNDHTLDPTQTFQIINVIGKGYKEIGFWSNGLGFSSNIGQHDVSYSSSMKELGQVMWPGRPWETPRGWALPTIEKPLRVGVPALSTLKQFINITHDQFQGFTIDLFKATMDLMPYHVPYKFYAFNDTYDELVRQIYLKNFDAVIDVTIISYRYQYAEFTQPYTDPGVVMVVPLKSKTGHRAWLFVKPFTKTMWILIVLVIIYNVFVLWMLERKHFCELKGSILKQYGNIAWLAMTPLVNLNGDKLHNNLSRVAMVVWLFVALIIMQTYTANLTSMLTVERLEPTIGDVDQLRNNNAMVGYSTGSFLKNYLHDVLHFNPANIRQFRSHEEFAEALRRKEIAAVFIEVPGAKIFLAKYCKEFIQAGPMYKIGGFGFAFPQGSPYLPLVNKALLDLFESGKQRELENRMLASEKCEESEPDGETASLSPNSFWALFTLTAGTSTIALLIYVTGTNGSNHDQKTIGWLTSAVIEQWGQAKRRLSRKDSHVAESPVNSPDSDSHVMQRPQA 870
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g01527 870 Pfam Receptor family ligand binding region 57 382 IPR001828 -
Aip08g01527 870 Gene3D - 50 374 - -
Aip08g01527 870 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 30 858 - -
Aip08g01527 870 MobiDBLite consensus disorder prediction 850 870 - -
Aip08g01527 870 Pfam Bacterial extracellular solute-binding proteins, family 3 459 769 IPR001638 -
Aip08g01527 870 CDD GluR_Plant 439 771 - -
Aip08g01527 870 SUPERFAMILY Periplasmic binding protein-like II 418 769 - -
Aip08g01527 870 PIRSF IGluLR_plant 1 869 IPR017103 -
Aip08g01527 870 CDD PBP1_GABAb_receptor_plant 40 402 IPR044440 -
Aip08g01527 870 SUPERFAMILY Periplasmic binding protein-like I 40 432 IPR028082 -
Aip08g01527 870 SMART GluR_14 440 773 IPR001320 GO:0015276|GO:0016020
Aip08g01527 870 PANTHER GLUTAMATE RECEPTOR 30 858 - -
Aip08g01527 870 MobiDBLite consensus disorder prediction 843 870 - -
Aip08g01527 870 Pfam Ligand-gated ion channel 770 802 IPR001320 GO:0015276|GO:0016020
Aip08g01527 870 Gene3D - 437 543 - -
Aip08g01527 870 Gene3D - 150 394 - -
Aip08g01527 870 Gene3D - 544 677 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g01527 Aip-Chr8 26155044 26159924 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g01527 29 809 Ion Channels AT5G11180 32.134 4.45e-131 415
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g01527 - - var:108332761 1134.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g01527 08 26155044 26159924 Aip08g01527 08 26155044 26159924 ECH