Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g01506 ATGGGTCGCCCACCCAGCAATGGAGGACCTGCCTTTCGCTTCACTTCATCTGAGGTTGCAGAAATGGAGGCTATTTTGCATGAGCACAATAATGCAATGCCGGCACGCGATGTTCTTACTGCTATTGCAGAGAAGTTCAGTGAATCACCGGGTCGTAAAGACAAGATTACTGTTCAGATGAGACAAGTGTGGAATTGGTTTCAAAATAAGCGATATGCTATAAGGGCAAAATTAAACAAGTCTCTTGTAAAGTTAGATATCACACCAATGACCAAGGCCAGTTCAGCCGTAGTAAAGAATATTCATCAACCAACAGCTGCTACAATTCCAACTGCTTCAGGAAAAGTTACTCAAGAAAGCTCAGCCACAGAATTTGAAGCTAAATCTGGAAGGGATAGAGCATGGTATGACGTTGCTAACTTTATAATGCACAGATATTTGGAGAGTGGTGATCCGGAAGTGCTGGTAAGATTTTCTGGTTTTGGACCTGCGGAAGATGAGTGGGTAAATGTCCGAAAGAATGTCAGGCCACGCTCTCTGCCATGTGAATCAGCAGAATGTGTTGCAGTCCTTCCCGGGGATCTTATACTATGTTTTCAGGAAGGTAAAGAACAGGCCCTTTATTTTGATGCCCATGTACTTGATGCTCAAAGGCGGAGGCATGATGTAAGAGGTTGCCGTTGTAGATTTTTGGTTCGTTATGATCATGATCAGTCAGAGGAAATTGTGCAACTTAGGAAGATTTGTCGCAGGCCGGAAACCGATTTCAGGTTACAACAGCTTCATGCCGTGCCGGAGATGAAGAGTGGCATGGATCCAGCACCTGTTCATGCTGTCAGGGTTACTACTTCGGCCGAATCACAGAAACAACAGAATGCAAACACTCCAATGTCAACATTAGCACAAAGTATAAGTAAAGTCGAAACATCTAGCGATGTTACGGCAGGAAGCGTGTTCCCGGTCAGTGCTGCTACATTCGCAACCAACGTTGCTTCAAGCAGTGTTCATGGTGCCTCTAGTCACAGCATGGCTGAAGGAAAATAA 1044 0.4483 MGRPPSNGGPAFRFTSSEVAEMEAILHEHNNAMPARDVLTAIAEKFSESPGRKDKITVQMRQVWNWFQNKRYAIRAKLNKSLVKLDITPMTKASSAVVKNIHQPTAATIPTASGKVTQESSATEFEAKSGRDRAWYDVANFIMHRYLESGDPEVLVRFSGFGPAEDEWVNVRKNVRPRSLPCESAECVAVLPGDLILCFQEGKEQALYFDAHVLDAQRRRHDVRGCRCRFLVRYDHDQSEEIVQLRKICRRPETDFRLQQLHAVPEMKSGMDPAPVHAVRVTTSAESQKQQNANTPMSTLAQSISKVETSSDVTAGSVFPVSAATFATNVASSSVHGASSHSMAEGK 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g01506 347 CDD homeodomain 13 75 IPR001356 GO:0003677
Aip08g01506 347 Gene3D - 182 254 - -
Aip08g01506 347 SMART HOX_1 7 81 IPR001356 GO:0003677
Aip08g01506 347 PANTHER PROTEIN SAWADEE HOMEODOMAIN HOMOLOG 2 1 323 IPR039276 -
Aip08g01506 347 ProSiteProfiles 'Homeobox' domain profile. 13 77 IPR001356 GO:0003677
Aip08g01506 347 Gene3D - 10 84 - -
Aip08g01506 347 SUPERFAMILY Homeodomain-like 4 77 IPR009057 -
Aip08g01506 347 Pfam SAWADEE domain 123 249 IPR032001 GO:0003682
Aip08g01506 347 Gene3D - 120 181 - -
Aip08g01506 347 PANTHER PROTEIN SAWADEE HOMEODOMAIN HOMOLOG 2 1 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g01506 Aip-Chr8 25681093 25685204 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Aip08g01506 SAWADEE 2e-39 CL0049
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g01506 - - aip:107630217 448.358
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g01506 08 25681093 25685204 Aip08g01506 08 25681093 25685204 ECH