Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g01486 ATGGACAGCTTCTACCACCACCATAACCACCACTTTGACAACAGCGACACTCACTTGCCACCTGGATTCCGATTCCACCCCACCGATGAAGAACTCATCACCTACTACCTCGTCAAGAAGGTTCTCGACAACACCTTCACCGGAAGAGCCATAGCTGAAGTTGACCTCAACAAGTGTGAGCCATGGGAGCTCCCTGAGAAAGCGAAGATGGGTGAGAAAGAATGGTACTTCTTCAGCTTAAGGGACAGGAAGTACCCAACTGGGTTGCGCACAAATAGAGCGACGGAAGCTGGGTACTGGAAAGCCACTGGAAAAGACAGAGAGATCTACAGCTCCAAGACTTGTGCTCTTGTTGGAATGAAGAAGACACTTGTTTTCTACAGAGGAAGAGCTCCCAAGGGTGAGAAGAGCAACTGGGTGATGCATGAGTATCGCCTTGAAGGCAAATTTGCCTACCATTATCTCTCTAGAAGCTCCAAGGATGAGTGGGTGATTTCTCGTGTGTTCCAGAAGACAACCACCGGGGGTGGCGGTGGAGGCGGAGGCTCAGCCGTGTCAACCACCGCCGGCGGGTCCAAGAAGGCAAAAATGAGCACTTCAACCACCACTTCTACAATGAGCTTCTGCCCTGAACCAAGTTCTCCCTCTTCGGTTTACCTTCCACCACTTCTCGACTCCTCACCTTACACTACCGCCACCACCGGCTCCGTCACCTCCGCCGCCGCAGCATACGACGGCCGCCAGAGCTCCTCCTTCGACAACAACAACAACGATAGCACAAGGGAGCACGTGTCCTGTTTCTCCACAATCTCCAACAACTTTGTCAATGGGTTCTTCGATCTTGCTCCTATGGACTCCTTCGCTCGATTCCAAAGAAACAACAATGTCGGTGTTTCTGCATTCCCAAGTCTAAGGTCTCAGCAAGATAACCTTCAAATTAACCCTTTGTTTTTCTCCGCCGCAGCGGCGCAGCCTCTCCACGGCGGCGAGCTTCACGCCGCGGGGGCCTGGCCGGTGCCGGAGGATCAGAGGGTTGCCGAGGCTGCTGCCGCCGGCATGGCTTTGGGACATTCCGAGCTTGATTGCATGTGGGGCTATTGA 1101 0.535 MDSFYHHHNHHFDNSDTHLPPGFRFHPTDEELITYYLVKKVLDNTFTGRAIAEVDLNKCEPWELPEKAKMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSSKTCALVGMKKTLVFYRGRAPKGEKSNWVMHEYRLEGKFAYHYLSRSSKDEWVISRVFQKTTTGGGGGGGGSAVSTTAGGSKKAKMSTSTTTSTMSFCPEPSSPSSVYLPPLLDSSPYTTATTGSVTSAAAAYDGRQSSSFDNNNNDSTREHVSCFSTISNNFVNGFFDLAPMDSFARFQRNNNVGVSAFPSLRSQQDNLQINPLFFSAAAAQPLHGGELHAAGAWPVPEDQRVAEAAAAGMALGHSELDCMWGY 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g01486 366 Pfam No apical meristem (NAM) protein 20 146 IPR003441 GO:0003677|GO:0006355
Aip08g01486 366 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 10 362 - -
Aip08g01486 366 MobiDBLite consensus disorder prediction 175 198 - -
Aip08g01486 366 ProSiteProfiles NAC domain profile. 19 171 IPR003441 GO:0003677|GO:0006355
Aip08g01486 366 Gene3D NAC domain 28 175 IPR036093 GO:0003677|GO:0006355
Aip08g01486 366 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-LIKE 10 362 - -
Aip08g01486 366 SUPERFAMILY NAC domain 10 171 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g01486 Aip-Chr8 25010162 25012214 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g01486 1 366 NAC Transcription Factor Family AT5G53950 52.284 1.14e-119 349
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Aip08g01486 NAM 1.1e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g01486 - - cam:101501114 477.633