Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g01478 ATGGAGGCCAGGATGAGGAGAACAACAGTTGAGAAGATGAGGAAGGATAGCACAGTTGATGAGGTAGAAGAGGAGTTAGAAGAGGAAGATGAGAGTGGTGTTGGTGATGGTGTCCTTGCAGAAGAAGAGAAGAAGAAAAGTGCTGTTGGAAGTGGGAGAAGAGGATCAAATGGGGCAGGAGGAGTTTCTCCACCTTCCTGCCAGGCTGAGAGGTGTGGCGCCGACTTGACCGAGGCAAAAAGATACCACCGCCGCCATAAGGTGTGTGAGTTTCATTCCAAGGCACCTGTGGTGGTGGTTGCAGGGATGAGGCAGAGGTTTTGCCAGCAATGTAGCAGGTTCCATGACCTGGCAGAATTTGATGAAGCCAAAAGAAGCTGCCGCAGGCGCTTGGCCGGACACAACGAGAGACGCCGGAAGAGCAACATAGAGCCTTGCAACGAGGGAAGCGGCCGAGGCGGCAAAGGGCAACCCCCTAAGGAAAGCCACTGCAGAAACACCGACGATCGGGGAAGAACTCAGATGAACATTTCAGGGAGCTCTGGCTACAAGTCCTTCCATATCAGATGA 570 0.5298 MEARMRRTTVEKMRKDSTVDEVEEELEEEDESGVGDGVLAEEEKKKSAVGSGRRGSNGAGGVSPPSCQAERCGADLTEAKRYHRRHKVCEFHSKAPVVVVAGMRQRFCQQCSRFHDLAEFDEAKRSCRRRLAGHNERRRKSNIEPCNEGSGRGGKGQPPKESHCRNTDDRGRTQMNISGSSGYKSFHIR 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g01478 189 MobiDBLite consensus disorder prediction 1 20 - -
Aip08g01478 189 Gene3D - 58 128 IPR036893 GO:0003677|GO:0005634
Aip08g01478 189 Pfam SBP domain 67 140 IPR004333 GO:0003677
Aip08g01478 189 MobiDBLite consensus disorder prediction 1 69 - -
Aip08g01478 189 MobiDBLite consensus disorder prediction 21 36 - -
Aip08g01478 189 Coils Coil 12 32 - -
Aip08g01478 189 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 2 189 - -
Aip08g01478 189 MobiDBLite consensus disorder prediction 132 189 - -
Aip08g01478 189 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 2 189 IPR044817 GO:0003677
Aip08g01478 189 ProSiteProfiles Zinc finger SBP-type profile. 64 141 IPR004333 GO:0003677
Aip08g01478 189 SUPERFAMILY SBT domain 65 144 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g01478 Aip-Chr8 24796655 24797858 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g01478 52 154 SBP-box Gene Family AT1G53160 70.192 1.64e-42 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Aip08g01478 SBP 9.9e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g01478 - - gmx:100815775 253.447
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g00936 08 10854096 10855075 Aip08g01478 08 24796655 24797858 ECH
Aip08g01478 08 24796655 24797858 Aip10g00428 10 4231387 4232909 ECH
Aip08g01478 08 24796655 24797858 Aip03g03805 03 120412750 120414482 ECH
Aip08g01478 08 24796655 24797858 Aip08g01478 08 24796655 24797858 ECH