Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g01428 ATGGCTTGGTATTTGTTCACTATTGATATTCAAACTATCTTGATTGCTCTTGGCATAGTCATATTGTTCTTCTTCATCTTCTACCAAATCCTCTATGGATTGTTCTTTTGGTACTTAGAATTAAGCCCGGAGGAATTGCGTGATATCGAAGAAGCGATCCATCGATCATATGGGGATACTCCTAATCACCATATTATTCTCTTGGAAACTCTTATCCAGAGAGATATACAAAATTCGTTGGCCATGGTGGACGACAAGGAATGTGGACCGAAACTAAGAGCTTCGAATAAGCTGCCACCATTGGTGAGCTATGGCATGCACGACACAACAAAAAGTCATTGCGACGAATGTGCCATTTGCATGGAAGATTTTGAAGATGGACAATATTGTCAAGTGTTTCCTAAGTGCAAGCACATGTATCATTCAAATTGTATAGACACTTGGTTGCAAAAGAATCCAACATGTCCCATATGTCGTAGTTGCATTGTGTAA 492 0.3943 MAWYLFTIDIQTILIALGIVILFFFIFYQILYGLFFWYLELSPEELRDIEEAIHRSYGDTPNHHIILLETLIQRDIQNSLAMVDDKECGPKLRASNKLPPLVSYGMHDTTKSHCDECAICMEDFEDGQYCQVFPKCKHMYHSNCIDTWLQKNPTCPICRSCIV 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g01428 163 Pfam Ring finger domain 115 159 IPR001841 -
Aip08g01428 163 CDD RING-H2_PA-TM-RING 116 159 - -
Aip08g01428 163 SUPERFAMILY RING/U-box 116 162 - -
Aip08g01428 163 ProSiteProfiles Zinc finger RING-type profile. 117 159 IPR001841 -
Aip08g01428 163 SMART ring_2 117 158 IPR001841 -
Aip08g01428 163 PANTHER - 6 163 - -
Aip08g01428 163 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 81 162 IPR013083 -
Aip08g01428 163 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 6 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g01428 Aip-Chr8 23249402 23249893 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g01428 1 160 C3H Transcription Factor Family AT1G53010 30.723 3.71e-15 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g01428 - - adu:107462572 338.961