Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g01369 ATGGGAATTCAAGAGAAAGACCCTCTCTCGCAATTGAGTTTACCGCCGGGTTTCCGATTTTATCCGACGGACGAGGAGCTTCTCGTTCAGTATCTGTGCCGCAAGGTTGCTGGCCACCATTTCTCCCTGGAAATCATTGGCGAAATTGATTTGTATAAGTTCGACCCTTGGGTTCTTCCAAGTAAGGCAATTTTCGGCGAGAAAGAATGGTACTTCTTTAGTCCGAGGGATAGGAAGTATCCGAATGGTTCGCGACCCAATCGGGTAGCCGGGTCGGGTTACTGGAAAGCCACCGGGACCGATAAGACTATCACGACCGAAGGAAGGAAAGTTGGTATCAAGAAAGCTCTGGTTTTCTACATTGGTAAGGCACCCAAAGGCACCAAAACAAACTGGATCATGCACGAGTATCGCCTCCTAGACTCTACCCGTAAGAACGGGAGCACCAAGCTTGACGATTGGGTTCTGTGCCGGATATACAAGAAGAATTCAAGCGCACAGCAGAAGGTACCAAACGGCGTCGTTTCGAGTAGCGAGCAATATGCCACGCAATACAGCAACGGATCTTCTTCAAACTCCTCTTCCTCCCACCTCGACGAGGTGCTCGAGTCCCTGCCGGAGATCGACGACCGTTGCTTCGCCTTGCCACGTGTCAACTCCTTAAGAGCGCTGCAGCAGCAGCGCCATCACCAAGAAGACACCAAGGTCGGCCTACTCCAACAGCAACAGCAACAGGGTCTCGTAGCCGGCACCGGTAGTTTCTTGGACTGGGCTTCCGGGCCGGGGATTCTGAACGATTTGGGCCAGGCCCAGCAGGGGATTGTTAACTACGGAAATGACCTCTTTGTCCCTTCAGTGTGCCACGTGGATTCCAATTTGGTGCCAGCAAAGATAGAAGAGGAGGTTCAGAGCGGTGTGAAGACTCAATCCGCATTCTTTCAGCAGGGACCGAACCCGAATGACTTCACACAAGCATTCTCAAACCAATTAGATCCTTACGGGTTTAGTAGGTACTCGGTTCAACCGGTTGGGTTCGGGTTCAGGCAATGA 1050 0.5171 MGIQEKDPLSQLSLPPGFRFYPTDEELLVQYLCRKVAGHHFSLEIIGEIDLYKFDPWVLPSKAIFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKTITTEGRKVGIKKALVFYIGKAPKGTKTNWIMHEYRLLDSTRKNGSTKLDDWVLCRIYKKNSSAQQKVPNGVVSSSEQYATQYSNGSSSNSSSSHLDEVLESLPEIDDRCFALPRVNSLRALQQQRHHQEDTKVGLLQQQQQQGLVAGTGSFLDWASGPGILNDLGQAQQGIVNYGNDLFVPSVCHVDSNLVPAKIEEEVQSGVKTQSAFFQQGPNPNDFTQAFSNQLDPYGFSRYSVQPVGFGFRQ 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g01369 349 ProSiteProfiles NAC domain profile. 14 162 IPR003441 GO:0003677|GO:0006355
Aip08g01369 349 Pfam No apical meristem (NAM) protein 15 139 IPR003441 GO:0003677|GO:0006355
Aip08g01369 349 PANTHER NAC TRANSCRIPTION FACTOR 56 1 320 - -
Aip08g01369 349 Gene3D NAC domain 23 168 IPR036093 GO:0003677|GO:0006355
Aip08g01369 349 SUPERFAMILY NAC domain 10 162 IPR036093 GO:0003677|GO:0006355
Aip08g01369 349 PANTHER NAC DOMAIN-CONTAINING PROTEIN 55 1 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g01369 Aip-Chr8 21828035 21829957 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g01369 1 335 NAC Transcription Factor Family AT1G52890 57.522 2.34e-121 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Aip08g01369 NAM 2.1e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g01369 - - gmx:100170718 479.174
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g01369 08 21828035 21829957 Aip08g01369 08 21828035 21829957 ECH