Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g01355 ATGTGCTCCTCTGTCATTCTGCCGTCAGCTATCCCTTTTATCTTCTCGCTCACGCAACCTGCCTTCGCTTTCATCGAATCGCTCACGCAACCTGCCTTCTTGATGGATTTGTTTGAACAGGTATGGGGTTTCTTCCTAATCTACTTTCTTCATGGTGATGTGATTGACAGAGTTTTTCAGCAAAGTTTTGCTCCTATGATTAGTTGTCTCTATGCCATTGAATGGAGATGCATATGGACTGAGATTTTGTTTTCCCTCCGTTTCCATCCTCAATTTGAATTAAAAAAGTGTGGAAAAATTCAAGCTACAGCTAAGAAATCACTCCTTAATAGGTTTAGAGATCATATAGTTGAAGGTCAAGTTTATAGAATGGCATACTTTGCTGTTGTGTCAAATCATGGTAGTTATAGAACAACTTCTCATGAATTCAAATTGGTTTTCTTTCACCGAACCACTGTTGTAGCTGTTGATGAAGATGTTATCCCTAAGACTTGTTTCAACATGTTTCCTTTTTCTGAGCTGCTGAACATTACCCAAGATTATGATTTTTTAGTTGATGTCATTGGTCTTTTAACTTCAGTGGGAGAAAAGAAAGAATATGCAAAAGAGGGGAAAATTGTGAAAATGATTGTGCTGGAATTAATTTCAAAAGATCTTACAGTGCAATGTGCATTGTTTGGAGATTATGTTAATCAAGTAAATCATTTCCTTGCCTCTGGCTATGTGGAGCAGCCTGTAGTAGTCATTCAACTTGCAAAAGTCAAGTTCTTTAGGGGTCAAGTAGGTCTTCAAAATGTGATGTATACCACTCAAATGTTATTTAATCCTGATCTTCTTGAAGTTGTTGAATTCAGGCAGAGTATGATTGAGCAAGTTGTCAATGGTACTCAGCCACTGTTTATTGCAAATGAGGGTAAAGTTGTCTCCTTGGAAGATGATTTCATGCGTTTAACTAGAAAATGCACTATTGAAGAGTTTCAAGATAACAATGAGGAGGGTTCTTTTATCATTTTTGGTACAATCCAAGGTATTGTTGAGGATGGAGGTTGGTGGTATTCTGCTTGTGTGTGTGGAAAAGGTATCTATCCTCAAAATGGTGCATATTACTGTGATTTTTGTTTGAAGCACATAACTAATGTGACTCCAAGATTTAAAATTAAAATAACACTTGAAGATCATAGTGGGGAGGGTATTTTCCTTCTCTTTTATCGTGAGGCATCTTATTTGCTTAAGAAATCATGTGCTGACTTGTTTACTGAGGTTCAAAGAGATGCAAGTCTTATATGTGGGGATACTTATCCTCCCATATTCCAAGGGCTCATTGGAAAGAAGTTACTGCTCAAGGTTGATACAAAGGAGCCTGATTTACACAAATCTGTTCCTGTGGAAAAGGGTATATTGCCTACTGTTTCCAGAGGGACTGAGTTTACTGCCTTAATTAATGGTGAAGATGGAAAAGACGAGAAAACACCCAGCAATGATACTGTTAGTGATGATCTTTCTGCTGTACTGGATATATTACTTAGCTCACCAGAAAAAGAAACTCAGGAGGTGTTGTCCCACGTTCTCGATGTACCTTCCCAATATGGAGAGAAGCTTATTCATGAAAATCATGTTGCACCTCGAAGGGCAAGAGGAATTTGA 1644 0.3796 MCSSVILPSAIPFIFSLTQPAFAFIESLTQPAFLMDLFEQVWGFFLIYFLHGDVIDRVFQQSFAPMISCLYAIEWRCIWTEILFSLRFHPQFELKKCGKIQATAKKSLLNRFRDHIVEGQVYRMAYFAVVSNHGSYRTTSHEFKLVFFHRTTVVAVDEDVIPKTCFNMFPFSELLNITQDYDFLVDVIGLLTSVGEKKEYAKEGKIVKMIVLELISKDLTVQCALFGDYVNQVNHFLASGYVEQPVVVIQLAKVKFFRGQVGLQNVMYTTQMLFNPDLLEVVEFRQSMIEQVVNGTQPLFIANEGKVVSLEDDFMRLTRKCTIEEFQDNNEEGSFIIFGTIQGIVEDGGWWYSACVCGKGIYPQNGAYYCDFCLKHITNVTPRFKIKITLEDHSGEGIFLLFYREASYLLKKSCADLFTEVQRDASLICGDTYPPIFQGLIGKKLLLKVDTKEPDLHKSVPVEKGILPTVSRGTEFTALINGEDGKDEKTPSNDTVSDDLSAVLDILLSSPEKETQEVLSHVLDVPSQYGEKLIHENHVAPRRARGI 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g01355 547 CDD RPA1_DBD_C 335 453 IPR013955 -
Aip08g01355 547 Pfam Domain of unknown function DUF223 99 178 IPR003871 -
Aip08g01355 547 Gene3D - 311 464 IPR012340 -
Aip08g01355 547 CDD RPA1_DBD_B_like 186 289 - -
Aip08g01355 547 Gene3D - 93 158 IPR012340 -
Aip08g01355 547 SUPERFAMILY Nucleic acid-binding proteins 166 287 IPR012340 -
Aip08g01355 547 CDD RPA1_DBD_A_like 95 153 - -
Aip08g01355 547 Pfam Replication factor-A C terminal domain 337 422 IPR013955 -
Aip08g01355 547 SUPERFAMILY Nucleic acid-binding proteins 321 453 IPR012340 -
Aip08g01355 547 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 105 418 - -
Aip08g01355 547 SUPERFAMILY Nucleic acid-binding proteins 98 158 IPR012340 -
Aip08g01355 547 Gene3D - 160 295 IPR012340 -
Aip08g01355 547 PANTHER REPLICATION FACTOR A 1, RFA1 105 418 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g01355 Aip-Chr8 21500070 21506178 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g01355 98 395 Core DNA Replication Machinery Family AT2G06510 23.734 3.69e-13 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g01355 - - adu:107471135 760.755