Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g01304 ATGGAAGTGGAGCCTATGGATTTGCTTCGATCAAATCTTTCCCGCGTTCGCATCCCCGAACCCACCAATCGCATCTTCAAGCATGAATGCTGCCTCTCCTTCGATACCCCCAAGTCAGAGGGTGGGTTGTACATCGACATGTTCACTTTCCTTGCCTTTGGGAAGGACTGTGTGGGTTGGAATTTCGAGAAGACTGGTAACCCTGTTTATTTGCATGTAAAGAAGACCAAGAAGCTGGTTCCAGAAGACAGGCCTACCAAGAAACCAACCCGCTTGGCGATAGGGGTTGAAGGGGGATTCGACAACAATGAACCCGAATATGAAGAAACTCATAGTATAGTCATTTTACCAAACTATATATCTCTTCCATTCCCATCTGTTGAATTGCCAGAGAAGGTAAGGTTGGCTGCAGATGCTATAGTACTAGCTGAGGGTGCTGAACGGAAGGAGCAGGTTGCAGCTTGGACTGCTGATAAGAAAACAGTTAGTACCTATGCAATGAATTTACAGCAACTTGACAATGGTGTTGTCATCCCTCCGTCTGGTTGGAAATGTGCCAAGTGTGACAAGACGGATAATCTTTGGCTAAATCTGACTGATGGGATGATTCTTTGTGGGAGGCGAAATTGGGATGGAAGTGGTGGAAACAACCATGCTGTTGAGCATTACAATGAGACAGGCTACCCTCTTGCTGTAAAGCTCGGGACTATCACTGCTGATTTGGAAGCAGCAGACGTTTACTCATATCCAGAGGACAACAGCGTCTTAGACCCACATCTAGCACAGCATCTGGCCTTTTTTGGCATTGACTTCTCATCACTGCAAAAGACTGAAATGACGACCGCCGAAAGAGAACTTGATCACAATACCAATTTCGATTGGAATCGGATCCAAGAAAGTGGAGAGGAAAAGGAACCAATTTTTGGACCTGGATACACGGGATTGGTCAATCTTGGCAACAGTTGTTACTTGGCAGCAACTATGCAAGTTGTGTTCACAACAAGATCATTCTGTTCAAGGTACTATATAAACCAAAGTCTGAAAAAGGCATTTGAGACGGCTCCTGCTGATCCAACCGTCGACTTGAATATGCAACTGACAAAACTGGCCCATGGTCTACTATCTGGCAAATATTCTATGCCAGTTTATGAGGTGCGTAACCATCAATACATTTCTGTTGAAGATATGTTCAGATATAAACAGGAAGGGATACCTCCACGTATGTTCAAGTCTGTGATTGCTGCCAGTCATCCTGAATTTTCATCTATGCGGCAACAGGATGCTTTAGAATTTTTCCTTCATTTTCTCGATCAAGTTGAAAGATCTAATGCTGGGAAAGCTGAACTAGATCCTGCAAAGTGTTTCAAGTTTGGTATTGAAGATCGAATCTTGTGTTCATCTGGAAAAGTTGCATATAATAAAAGACGAGACTACATTCTATCTCTTAATATCCCATTGCACGAAGCAACTAATAAAGAAGAAATGGAATTATTTCGCAAATTGAAAGCAGAGAAGCTTTCTGAAGGGAAGGATGTGTCGGCCGAAGAGATTGTACGTCCAAGAGTTCCTTTAGAAGCTTGCCTTAGAAACTTCTCAGCTCCTGAGGAGATACATGATTTTTACAGCACTGCCTTGAAAGCAAAGACAACAGCATTGAAGACAGCTGGTTTCACATCATTCCCTGATTACCTCGTGTTACATATGAGGAAATTCGTTATGGAGGAGGGATGGGTGCCCAAAAAGCTTGATGTGTACATAGATGTTCCTGATATCATAGATATTAATCATATGCGTAGCAAAGGTCATCACCCAGGGGAAGAACTGTTACCAGATGCGGAACCCATTGACGAGGATTCAAACCAACCTTCCGCCAATGAAGACATTGTGGCACAGCTGGTTTCCATGGGTTTTAACCAGCTTCATTGTCAGAAGGCAGCTATTAACACCTCAAATGCTGGAGTAGAGGAGGCAATGAATTGGTTACTATCTCACATGGATGATCCAGATATTGACAGTCCTATTTCAAAAGGGAACAGCTCTGACAACGTTGATCAATCAAAAGTGGACATACTCATTTCTTTTGGATTTGAAGATCATGTTGCTCGAAAGGCATTGAAGGCATCGGGTGAAGACATTGAGAAGGCAACAGAGTGGATATTCAGCAATCCCGATGCATCAGTTTCTAGTATGGATGCTAGTGCATCAAACACAACCTCTGCTTCAAATGATGTTGGCTTGTCAGATGGAGGAGGAAAATATCGACTTATAGGAATTGTTAGCCACATGGGAACCTCGACACATTGTGGGCACTATGTAGCTCACATTTTGAAAGAAGGTAGATGGGTTATTTTCAATGACGCCAAGGTTGCGGTTTCGGTCAATCCTCCCAAGGACATGGGCTATCTATATTTTTTCGAGAGGATTGATGGTTGA 2433 0.432 MEVEPMDLLRSNLSRVRIPEPTNRIFKHECCLSFDTPKSEGGLYIDMFTFLAFGKDCVGWNFEKTGNPVYLHVKKTKKLVPEDRPTKKPTRLAIGVEGGFDNNEPEYEETHSIVILPNYISLPFPSVELPEKVRLAADAIVLAEGAERKEQVAAWTADKKTVSTYAMNLQQLDNGVVIPPSGWKCAKCDKTDNLWLNLTDGMILCGRRNWDGSGGNNHAVEHYNETGYPLAVKLGTITADLEAADVYSYPEDNSVLDPHLAQHLAFFGIDFSSLQKTEMTTAERELDHNTNFDWNRIQESGEEKEPIFGPGYTGLVNLGNSCYLAATMQVVFTTRSFCSRYYINQSLKKAFETAPADPTVDLNMQLTKLAHGLLSGKYSMPVYEVRNHQYISVEDMFRYKQEGIPPRMFKSVIAASHPEFSSMRQQDALEFFLHFLDQVERSNAGKAELDPAKCFKFGIEDRILCSSGKVAYNKRRDYILSLNIPLHEATNKEEMELFRKLKAEKLSEGKDVSAEEIVRPRVPLEACLRNFSAPEEIHDFYSTALKAKTTALKTAGFTSFPDYLVLHMRKFVMEEGWVPKKLDVYIDVPDIIDINHMRSKGHHPGEELLPDAEPIDEDSNQPSANEDIVAQLVSMGFNQLHCQKAAINTSNAGVEEAMNWLLSHMDDPDIDSPISKGNSSDNVDQSKVDILISFGFEDHVARKALKASGEDIEKATEWIFSNPDASVSSMDASASNTTSASNDVGLSDGGGKYRLIGIVSHMGTSTHCGHYVAHILKEGRWVIFNDAKVAVSVNPPKDMGYLYFFERIDG 810
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g01304 810 SUPERFAMILY RING/U-box 162 271 - -
Aip08g01304 810 Gene3D - 660 728 - -
Aip08g01304 810 CDD Peptidase_C19B 314 806 - -
Aip08g01304 810 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 623 664 IPR015940 -
Aip08g01304 810 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 149 258 IPR013083 -
Aip08g01304 810 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 15 809 - -
Aip08g01304 810 SUPERFAMILY Cysteine proteinases 309 809 IPR038765 -
Aip08g01304 810 Pfam Zn-finger in ubiquitin-hydrolases and other protein 185 259 IPR001607 GO:0008270
Aip08g01304 810 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 314 329 IPR018200 GO:0004843|GO:0006511
Aip08g01304 810 Gene3D - 624 659 - -
Aip08g01304 810 PIRSF UBP 6 809 IPR016652 GO:0004843|GO:0016579
Aip08g01304 810 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 313 808 IPR028889 -
Aip08g01304 810 ProSiteProfiles Zinc finger UBP-type profile. 161 271 IPR001607 GO:0008270
Aip08g01304 810 SUPERFAMILY UBA-like 669 724 IPR009060 GO:0005515
Aip08g01304 810 Pfam Ubiquitin carboxyl-terminal hydrolase 313 805 IPR001394 GO:0004843|GO:0016579
Aip08g01304 810 SMART uba_6 684 721 IPR015940 -
Aip08g01304 810 SMART uba_6 625 663 IPR015940 -
Aip08g01304 810 Gene3D Cysteine proteinases 306 810 - -
Aip08g01304 810 Pfam UBA/TS-N domain 684 719 IPR015940 -
Aip08g01304 810 Pfam UBA/TS-N domain 625 661 IPR015940 -
Aip08g01304 810 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 110 IPR013083 -
Aip08g01304 810 SMART Zf_UBP_1 184 239 IPR001607 GO:0008270
Aip08g01304 810 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 15 809 - -
Aip08g01304 810 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 682 722 IPR015940 -
Aip08g01304 810 MobiDBLite consensus disorder prediction 602 621 - -
Aip08g01304 810 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 753 771 IPR018200 GO:0004843|GO:0006511
Aip08g01304 810 Pfam Variant UBP zinc finger 16 78 IPR041432 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g01304 Aip-Chr8 20077439 20083356 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g01304 622 687 C2H2 Transcription Factor Family AT1G04850 34.848 5.71e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g01304 K11836 - gmx:100805602 1353.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g01304 08 20077439 20083356 Aip08g01304 08 20077439 20083356 ECH