Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g01285 ATGGCGCAGGGGATGAAGACGCTGCTACCTGCTGGCTCGATAGCGCAGCGAAAAATAGAAAGGGGTTATGGGTTTGCGGCGACGGAAGGGAGCGGCGGCAGAGGGAGCATCGACGGAGGCATTGCGAGCGTCGGCGATGTTCTTCGCGGAGCGCTGTGCGGAGCTTCTGGCCGCTACCGGAGCTGCTGCTGGGTCAGTTTGGGATTACGGCTCATCCGTTCTGCTGTTATCGTAAAGAGCAACATCGTGATGATGCTGCTACCGTGCGACTACTGCGACTCCAAAACGGCAGTTCTCTTTTGCCGCCCCGACTCTGCCAAGCTCTGCATCTCATGTGACCAGCACGTGCACTCCGCCAACGCCCTCTCACTCAAGCACGTGTGCTCTTAA 390 0.5872 MAQGMKTLLPAGSIAQRKIERGYGFAATEGSGGRGSIDGGIASVGDVLRGALCGASGRYRSCCWVSLGLRLIRSAVIVKSNIVMMLLPCDYCDSKTAVLFCRPDSAKLCISCDQHVHSANALSLKHVCS 129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g01285 129 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 86 127 - -
Aip08g01285 129 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 14-RELATED 86 127 - -
Aip08g01285 129 CDD Bbox1_BBX-like 88 127 - -
Aip08g01285 129 SMART bboxneu5 84 127 IPR000315 GO:0008270
Aip08g01285 129 ProSiteProfiles Zinc finger B-box type profile. 89 129 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g01285 Aip-Chr8 19499210 19504936 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g01285 86 129 C2C2-CO-like Transcription Factor Family AT2G33500 65.909 2.17e-15 69.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Aip08g01285 zf-B_box 3.1e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g01285 - - ahf:112697135 95.1301