Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g01279 ATGCAAAACAAGAAAAATCTATGGTTTTGGTCCATTCTATTGTCATTTATATTAAGAAACTCTACCTCGCTGGACAATATAACTCCTTTTCAATCCATCACTGATGGAGAGACATTAATTTCGAGTGGAGGAACCTTTGAACTTGGCTTCTACAGCCCCGGAAATTCAAAGGGCCGATACTTAGGAATCTGGTACCATAACATATCCCCTCAGGTAGTGGTCTGGGTGGCTAATAGAGAAAAACCGCTCAACAACACCTCCGGAATTCTAAAAGTCACCGGTGAAGGACTTGTTGTCCTTATTAATGGCAGCACCAACAGCAGCGTTGTATGGTCCTCCAACATGTCAAGCAAAGCAGGAGACAAACGGAATCCAATTGCACAGCTCTTGGAATCAGGAAATCTTGTTGTCAAAGATGGTCATAATAGTGACCACTTTCTGTGGCAGAGCTTTGATTATCCTTGTGATACATTCGTGCCCGGAATGAAGCTGGGATGGGATCTTGGGACAAGTCTAGAGAGGACTCTATCATCTTCAAAAAGTACTGATGATCCCGGCCGCGGACACTACACATTTAGAATAGACCTTCGAGGCGATCCGCAAATAGTTCTAATGAATGGAAATGCCACAACAATTAGAGTAGGGCCATGGAATGGGCTAATGTTTTCAGGAGCTACACTTTATTTGCGCTATAGCCAATTCTCATCTCAATTTGTTTTCAATGAAAAAGAGGTGTTTGTTAGGTTCAGACCAGAAAATACATCCAAATATATTAGAGGTGTAGTGTACCCTTGGGGAGGTATTCAGGTTTTGCATTGGTCAATACAAACCAGAGGCTGGGAGACCCTTATTTCTATACCGGAGGCTGAATGTGACAAGTATGCTCTGTGTGGTGCAAATTCTATTTGCAGTACTACCCCTACTCCTGTCTGTTCATGCCTTGAAGGATTCGCACCAAAATATCCTGGAAAATGGAAGGAATCTGATTGGTCTGATGGTTGTGTTAGGATCACTCCTTTAAGTTGCAGCAGAGATGGATTCAAGAAGGTCACCAGCATAGTATTGCCGGACACGTCTGCTTCTTGGTATAACAGGACCATGAACCTGCTGGAATGCAAGGAATTCTGTCTGAAAAATTGTTCTTGTACGGCATATTCCAATTTGGATATCCGTGATGGAGGAAGCGGTTGCTTGATCTGGTTTCATGATCTTATTGACATTAGACAAGGGACACAAGACTTCTATATTCGAATAGATGATAAGAAGAAAAATTATTCCAGCAAGAGTAAGCTAGAAGGCATCATTGTTGGCTCTATATTGTTCATCACGATCATAATACTTGGACTGAAATTATTTCTATGGAGAAAAAAACTTGAGGATCCAGATATATTTTGGTTGAAACATGTTCGCAAAATGGAAAAGGAAGACGCGGACTTTCCAACATTTGATTTATCAACTATAATTTATGCTACTGATCAATTTTCTAGCAGTAATGAAATGGGAAGAGGAGGATATGGACCAGTTTATAAGGGTGTACTTGCAAACGGGACAGAGATTGCAGTCAAGAGACTTTGCAAGAACTCCGACCAAGGACTGCAAGAGTTCAAAACGGAAGTTCAGCTAATTGCAAAACTTCAGCATCGCAACCTCGTAAAGCTTCTTGGTTGTTGCATTCAGCAAGAAGAGAAACTTTTGATTTATGAGCTCATGCCCAACAGGAGTTTGGACTACTTTATTTTTGATGATGCTAGAAGAAAATTATTGGATTGGACTAAGCGCTTTCACATTATTAGTGGTACAGCTAGAGGCCTAGTCTATCTGCATCAGGACTCTAGGCTAAGAGTCATTCATAGAGATCTAAAAACTAGTAATATTCTTCTTGACGAAGAAATGAATGCAAAAATATCAGACTTCGGTCTTGCTAGGACATTTGCAAGTGATCAGACTGAAGACAAGACTGGAAGAGTGGTGGGAACTCATGGTTATATTTCGCCCGAGTATGCAGTGCGTGGATCTTTCTCAATGAAATCTGATGTGTTCGCCTTTGGTGTAATCGTGCTTGAGGTAGTCAGTGGGAGGAAGACAAGAGAGTTTTGTGTCCCAGACCAAAGTCTTAACCTTCTGGGATTTGCATGGAAGCTATGGAATGAGGAGAGGACTTTGGAGCTGGTAGATGAATCACTGCGTGATTCGGTGAATGAAGATGAAGCATTGAGATGTATTCAGACAGGGCTGTTGTGTGTGCAAGAGAGACCAGAACATAGGCCTAACATGTCATCTGTAGTTCGTATGTTGGATGATGATAAACCATTGCCTCGGCCAAGGTTGCCGGCATTTTATTCACACCAACAAGATTCTACACTGATTGAAGGTGAAGATGGTGAAGAAGTTCATTCAGCAAATGAGAAATGGAGATCACAGTACTCAGGTCAGCAACGCACTCAGTTGGAATGCCAAGGAAGGAATTCAAGAGGAAATCATCAATTGGATCAACTTTTGCCACACCAACCAACCAATCTCTTCTCTCTTCCACTCATCATGTCACCTTTTGATTCTTCAGCTGTCAACACTGTCTTCACCATTAGTGTGGAGCCTCGTAGATACTCCCAGCAGAAAACAACTTGGCCTTGA 2631 0.4181 MQNKKNLWFWSILLSFILRNSTSLDNITPFQSITDGETLISSGGTFELGFYSPGNSKGRYLGIWYHNISPQVVVWVANREKPLNNTSGILKVTGEGLVVLINGSTNSSVVWSSNMSSKAGDKRNPIAQLLESGNLVVKDGHNSDHFLWQSFDYPCDTFVPGMKLGWDLGTSLERTLSSSKSTDDPGRGHYTFRIDLRGDPQIVLMNGNATTIRVGPWNGLMFSGATLYLRYSQFSSQFVFNEKEVFVRFRPENTSKYIRGVVYPWGGIQVLHWSIQTRGWETLISIPEAECDKYALCGANSICSTTPTPVCSCLEGFAPKYPGKWKESDWSDGCVRITPLSCSRDGFKKVTSIVLPDTSASWYNRTMNLLECKEFCLKNCSCTAYSNLDIRDGGSGCLIWFHDLIDIRQGTQDFYIRIDDKKKNYSSKSKLEGIIVGSILFITIIILGLKLFLWRKKLEDPDIFWLKHVRKMEKEDADFPTFDLSTIIYATDQFSSSNEMGRGGYGPVYKGVLANGTEIAVKRLCKNSDQGLQEFKTEVQLIAKLQHRNLVKLLGCCIQQEEKLLIYELMPNRSLDYFIFDDARRKLLDWTKRFHIISGTARGLVYLHQDSRLRVIHRDLKTSNILLDEEMNAKISDFGLARTFASDQTEDKTGRVVGTHGYISPEYAVRGSFSMKSDVFAFGVIVLEVVSGRKTREFCVPDQSLNLLGFAWKLWNEERTLELVDESLRDSVNEDEALRCIQTGLLCVQERPEHRPNMSSVVRMLDDDKPLPRPRLPAFYSHQQDSTLIEGEDGEEVHSANEKWRSQYSGQQRTQLECQGRNSRGNHQLDQLLPHQPTNLFSLPLIMSPFDSSAVNTVFTISVEPRRYSQQKTTWP 876
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g01279 876 ProSiteProfiles PAN/Apple domain profile. 342 419 IPR003609 -
Aip08g01279 876 Pfam S-locus glycoprotein domain 213 320 IPR000858 GO:0048544
Aip08g01279 876 CDD STKc_IRAK 500 766 - -
Aip08g01279 876 CDD PAN_AP_plant 338 418 - -
Aip08g01279 876 ProSitePatterns Serine/Threonine protein kinases active-site signature. 615 627 IPR008271 GO:0004672|GO:0006468
Aip08g01279 876 SUPERFAMILY Protein kinase-like (PK-like) 478 783 IPR011009 -
Aip08g01279 876 Pfam PAN-like domain 342 407 IPR003609 -
Aip08g01279 876 Gene3D Transferase(Phosphotransferase) domain 1 570 771 - -
Aip08g01279 876 Gene3D - 20 151 IPR036426 -
Aip08g01279 876 ProSiteProfiles Protein kinase domain profile. 494 776 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip08g01279 876 Pfam Protein tyrosine and serine/threonine kinase 497 765 IPR001245 GO:0004672|GO:0006468
Aip08g01279 876 SMART blect_4 30 154 IPR001480 -
Aip08g01279 876 PANTHER - 13 787 - -
Aip08g01279 876 PIRSF SRK 4 821 IPR024171 GO:0004674
Aip08g01279 876 SMART serkin_6 494 765 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip08g01279 876 ProSiteProfiles Bulb-type lectin domain profile. 24 150 IPR001480 -
Aip08g01279 876 Gene3D Phosphorylase Kinase; domain 1 464 569 - -
Aip08g01279 876 SMART ntp_6 342 418 IPR003609 -
Aip08g01279 876 CDD B_lectin 31 154 IPR001480 -
Aip08g01279 876 SUPERFAMILY alpha-D-mannose-specific plant lectins 73 183 IPR036426 -
Aip08g01279 876 Gene3D Hepatocyte Growth Factor 340 417 - -
Aip08g01279 876 Pfam D-mannose binding lectin 73 180 IPR001480 -
Aip08g01279 876 PANTHER S-LOCUS GLYCOPROTEIN DOMAIN, PAN/APPLE DOMAIN PROTEIN-RELATED 13 787 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g01279 Aip-Chr8 19301819 19305859 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g01279 420 796 Receptor kinase-like Gene Family AT4G23190 46.429 6.47e-116 364
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Aip08g01279 PK_Tyr_Ser-Thr 1.8e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g01279 - - aip:107611884 1622.83