Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g01278 ATGCAAAACCAGAAAGTTCTATGCTTTTGGTCCGTTCTGTTCTCATTTATATTAAGAAACTCTATTTCACTCGACAATATAACTCCTGTTCAATACATCACTGATGGACAAACATTAATTTCGAGTGGAGGAACCTTTGAACTTGGCTTCTACAGCCCCGGAAATTCAAATGGCCGATACTTAGGCATATGGTACCATAACATATTCCCTAAGGTAGTCGTGTGGGTGGCAAACAGAGAAAAACCCCTCAACAACACCTTCGGAGTTCTAAAACTCACCGGTGAAGGACTTGTTGTCCTTATTAATGACAGCACCAACAGCAGCATTGTGTGGTCCTCCAACATGTCAAGCAAAGTGGAAGACAAATGGAATCCAGTTGCACAGCTCTTGGAGTCAGGAAACCTTGTTGTCAAAGATGGTCATAATGGTGACCACTTTCTATGGCAGAGCTTTGATTATCCTTGTGATACATTCTTGCCGGGAATGAAGCTGGGATGGGACCTTGTGACAGGTCTAGAGAGGACTCTATCATCTTCGAAAAGTACAGATGATCCCGGCCGCGGAGACTACACATTTAGAATAGACCTTCGAGGCGATCCGCAAATAGTTCTAATGAAAGGAACAGCCATAAAAATTAGAGTAGGGGCATGGAACGGGCTAATGTTTTCAGGAGCTACACTTTATTTGCGCTATAGCCAATTTTCATCTCAATTTGTTTTCAATGAAAAAGAGGTGTTTACTAGGTTCAGACCAGAAAATACATCCAAATATATTAGAGGTGTAGTGTACCCTTGGGGAGGTGTGCAGGTTTTGCATTGGTCAATACAAACCAGAGGCTGGGAGACCCTTATTTCTATACCAGAAGCCGAATGTGATAAGTATGCTCTGTGTGGTGCAAATTCTGTTTGCAGGACCACTCCGACTCCGGTCTGTGCATGCCTTGAAGGATTTGTACCAAAATATCCTGGAAAATGGAAGGACTCTTACTGGTCTGATGGCTGTGTTAGGGTCACTCCTTTAAGGTGCAGCAGAGATGGATTCAAGAAGGTTGCAGGCGTAGTGCTGCCGGACACGTCTACTTCTTGGTATAACAGGACCATGGACCTGCTAGAATGCAGAGAATTCTGTCTGAAAAATTGTTCTTGTACGGCATATTCCAATTTGGATATCCGTGATGGAGGAAGCGGTTGCTTGATCTGGTTTCATGATCTTGTTGACATTAGACAAGGGTCACAAGACTTCTATATTCGAATAGATGATAAGCAAAACAATGATTCCAGCAAGAGGAAGCTAGCAGTTATCGTTGTTGGCTCTATATTGTTCATCATGAGCATAATATTTGGACTGAAATCATTTCTATGGAGAAAAAAACTTGAGGAGTCAGGTGAACACATGATATTCTACATGCAACGTGATCACAAAAAGGAAAAGGAAAACATGGACCTCCCAACATTTGATTTATCAACCATAGTTTGTGCCACTGATCAATTTTCTAGCAGTAATGAATTGGGAAAAGGTGGATATGGACCAGTTTATAAGGGTGTACTTGCAAATGGGACTGAGATTGCCGTAAAGAGACTTTCCAAGAACTCTGACCAAGGACTGCAGGAGTTCAAAACGGAAGTTCAGCTAATTGCAAAACTTCAGCATCGCAACCTCGTAAAGCTTCTTGGTTGTTGCATTCAGCAAGAAGAGAAACTTTTGATTTATGAGCTCATGCCCAACAGGAGTTTGGACTACTTTATTTTTGATGATGCTAGAAGAAAATTATTAGATTGGTCTAAGCGCTTTCACATTATTCGTGGCACAGCTCGAGGCCTAGTCTACCTGCATCAGGACTCTAGGCTAAGAGTCATTCATAGAGATCTAAAAACTAGTAATATTCTTCTTGACAAAGACATGAATGCAAAAATATCAGACTTCGGTCTTGCTAGGACATTTGCATGTGATCAGATTGAAGACAAGACAAAAAGAGTGGTGGGAACTCATGGTTATATTTCGCCCGAATATGCCGTTCGTGGCTCATTTTCAATGAAATCTGATGTGTTTGCCTTTGGTGTAATCGTGCTTGAGGTAGTCAGTGGGAGGAAGACTAGAGAGTTCTGTGTCCCTAACCGAAGTCTTAACCTTCTTGGATTTGCATGGGAGCTATGGAATGAGGAGAGGACTTTGGAGCTGGTAGATGAATCACTGCGCGACCCGAATCAAGCTGAAGCAGCGAGATGCATTCAGATAGGACTGTTGTGTGTGCAAGAGAGACCAGAACATAGGCCAGACATGTCATCTGTAGTTCATATGTTGAATGATGATAAACCATTGCCTCGGCCAAGGCTGCCTGCATTTTATTCACACCAACAACATTCTACACTAATTGATGGTGAAGATGGTGAAGAAGTTCATTCCGCAAATGAGGTTACCATATCATTGTTAGGGGCAAGGCTGTGGTGTGAAGAGAGGCCATTGGAGCTTATAGATGAATCATTAACTGACTCGGTTGCTGCAGCAGAATCTGAAGTGCTAAGATGCATTCACATAGGGCTTTTATGTGTACAAGAGAGACCAGAGAATAGGCCAGACATGTCAGCCATAGTTCTAATGCTGAATGGTGAGAAACCATTACCAAGGTCAAGGGACCTGCTTTTTATCCACATCAGTTTGGCTTTTCATCAGGGAAATGTGCAGTGA 2685 0.4242 MQNQKVLCFWSVLFSFILRNSISLDNITPVQYITDGQTLISSGGTFELGFYSPGNSNGRYLGIWYHNIFPKVVVWVANREKPLNNTFGVLKLTGEGLVVLINDSTNSSIVWSSNMSSKVEDKWNPVAQLLESGNLVVKDGHNGDHFLWQSFDYPCDTFLPGMKLGWDLVTGLERTLSSSKSTDDPGRGDYTFRIDLRGDPQIVLMKGTAIKIRVGAWNGLMFSGATLYLRYSQFSSQFVFNEKEVFTRFRPENTSKYIRGVVYPWGGVQVLHWSIQTRGWETLISIPEAECDKYALCGANSVCRTTPTPVCACLEGFVPKYPGKWKDSYWSDGCVRVTPLRCSRDGFKKVAGVVLPDTSTSWYNRTMDLLECREFCLKNCSCTAYSNLDIRDGGSGCLIWFHDLVDIRQGSQDFYIRIDDKQNNDSSKRKLAVIVVGSILFIMSIIFGLKSFLWRKKLEESGEHMIFYMQRDHKKEKENMDLPTFDLSTIVCATDQFSSSNELGKGGYGPVYKGVLANGTEIAVKRLSKNSDQGLQEFKTEVQLIAKLQHRNLVKLLGCCIQQEEKLLIYELMPNRSLDYFIFDDARRKLLDWSKRFHIIRGTARGLVYLHQDSRLRVIHRDLKTSNILLDKDMNAKISDFGLARTFACDQIEDKTKRVVGTHGYISPEYAVRGSFSMKSDVFAFGVIVLEVVSGRKTREFCVPNRSLNLLGFAWELWNEERTLELVDESLRDPNQAEAARCIQIGLLCVQERPEHRPDMSSVVHMLNDDKPLPRPRLPAFYSHQQHSTLIDGEDGEEVHSANEVTISLLGARLWCEERPLELIDESLTDSVAAAESEVLRCIHIGLLCVQERPENRPDMSAIVLMLNGEKPLPRSRDLLFIHISLAFHQGNVQ 894
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g01278 894 Gene3D - 21 151 IPR036426 -
Aip08g01278 894 CDD PAN_AP_plant 338 418 - -
Aip08g01278 894 PANTHER S-LOCUS GLYCOPROTEIN DOMAIN, PAN/APPLE DOMAIN PROTEIN-RELATED 813 877 - -
Aip08g01278 894 PANTHER S-LOCUS GLYCOPROTEIN DOMAIN, PAN/APPLE DOMAIN PROTEIN-RELATED 14 809 - -
Aip08g01278 894 Gene3D Transferase(Phosphotransferase) domain 1 789 880 - -
Aip08g01278 894 ProSiteProfiles Protein kinase domain profile. 497 778 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip08g01278 894 Pfam S-locus glycoprotein domain 213 320 IPR000858 GO:0048544
Aip08g01278 894 Gene3D Hepatocyte Growth Factor 341 417 - -
Aip08g01278 894 ProSitePatterns Serine/Threonine protein kinases active-site signature. 618 630 IPR008271 GO:0004672|GO:0006468
Aip08g01278 894 SMART blect_4 30 154 IPR001480 -
Aip08g01278 894 Pfam PAN-like domain 342 407 IPR003609 -
Aip08g01278 894 ProSiteProfiles Bulb-type lectin domain profile. 24 150 IPR001480 -
Aip08g01278 894 SMART ntp_6 342 418 IPR003609 -
Aip08g01278 894 SMART serkin_6 497 773 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip08g01278 894 SUPERFAMILY Protein kinase-like (PK-like) 480 767 IPR011009 -
Aip08g01278 894 ProSiteProfiles PAN/Apple domain profile. 342 419 IPR003609 -
Aip08g01278 894 SUPERFAMILY alpha-D-mannose-specific plant lectins 73 184 IPR036426 -
Aip08g01278 894 CDD STKc_IRAK 503 768 - -
Aip08g01278 894 Pfam D-mannose binding lectin 73 180 IPR001480 -
Aip08g01278 894 PANTHER - 813 877 - -
Aip08g01278 894 PANTHER - 14 809 - -
Aip08g01278 894 Pfam Protein tyrosine and serine/threonine kinase 500 767 IPR001245 GO:0004672|GO:0006468
Aip08g01278 894 CDD B_lectin 30 154 IPR001480 -
Aip08g01278 894 Gene3D Transferase(Phosphotransferase) domain 1 573 773 - -
Aip08g01278 894 Gene3D Phosphorylase Kinase; domain 1 470 572 - -
Aip08g01278 894 PIRSF SRK 2 813 IPR024171 GO:0004674
Aip08g01278 894 PIRSF SRK 797 890 IPR024171 GO:0004674
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g01278 Aip-Chr8 19256233 19292226 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g01278 790 875 Receptor kinase-like Gene Family AT4G23190 39.785 8.01e-13 70.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Aip08g01278 PK_Tyr_Ser-Thr 4.1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g01278 - - aip:107611884 1444.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g01278 08 19256233 19292226 Aip08g01278 08 19256233 19292226 ECH