Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g01273 ATGCGCTATAGGGGCACGCGTCTGAGGAGTGGCAAGTGGGTGTCGGAGATAAGGTTGCCACGTACCACGAAGCGCATTTGGCTAGGGACATACCCCACACCTGAGATGGCTGCTGCTGCTTACGATACTGCCACTCTTGCATTGAGGGGCCCCGAAGCCCATCTCATACTCTCTTATCCTATTCCTGCTTCCTTCTCCGATTCTGATTCTGATATTCGCGATGCTGCTGCCGTCGCCGCCTCCATCGTCGCAGCTCCTCCTGCTCAGCAAGTAGGGGATTATTTTGATGAGGATGAGGTGTTGAATATGCCGAGTGTAATCGAAGACATGGACAGGGGACTACTGATTAGCCCACCCAGGATCCCTTCTTTCTCCGACGATGACTACTTCCCCCTCGACCACACCCACTTTTATTCAGATATCTATACCCTTTGGTAA 438 0.5251 MRYRGTRLRSGKWVSEIRLPRTTKRIWLGTYPTPEMAAAAYDTATLALRGPEAHLILSYPIPASFSDSDSDIRDAAAVAASIVAAPPAQQVGDYFDEDEVLNMPSVIEDMDRGLLISPPRIPSFSDDDYFPLDHTHFYSDIYTLW 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g01273 145 ProSiteProfiles AP2/ERF domain profile. 2 60 IPR001471 GO:0003700|GO:0006355
Aip08g01273 145 Gene3D AP2/ERF domain 1 60 IPR036955 GO:0003700|GO:0006355
Aip08g01273 145 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 2 128 - -
Aip08g01273 145 Pfam AP2 domain 3 50 IPR001471 GO:0003700|GO:0006355
Aip08g01273 145 CDD AP2 2 55 IPR001471 GO:0003700|GO:0006355
Aip08g01273 145 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF026 2 128 - -
Aip08g01273 145 SUPERFAMILY DNA-binding domain 3 55 IPR016177 GO:0003677
Aip08g01273 145 SMART rav1_2 2 64 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g01273 Aip-Chr8 19135244 19135839 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g01273 3 134 AP2-EREBP Transcription Factor Family AT5G52020 45.399 2.89e-28 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Aip08g01273 AP2 5.5e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g01273 - - aip:107612168 260.766