Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g01261 ATGGAAGCCTTTAGCCTTCTCCTGTTATGCTTCTCTCTGCTGAATTTAATACAATTTTGTGCTCCAAGAGACACAATTAACACACTGCAATCTATCAGTGATGGTGAGACATTAGTTTCAGCAGATGAAACCTTTGCATTGAGATTCTTCAGCCCTGGAACTTCCAAGAACCGTTATGTTGGAATTTGGTTTAACAAAGATCCAACAAAGGCAATAGTATGGGTTGCAAACAGAAAAACACCCCTCACTGACTCCTCAGGGGTTTTGAAGGTCAACACCACCGAAATTCTAGTCCTTCTTGATAGTAATAATAGTCTTATCTGGTCATCCAACACGACAGGATCGGCACGAAGTCCGGTTGCAAAGCTTTTGAATTCTGGGAATTTTGTTGTGCAGGATGACAGCAATAGCGACACGGAAGATTTTGTGTGGCAAAGTTTTGCCTATCCAGGCGACACAATCTTGCCTGGACAGAAGTTGGGAAGAAACTTAGCTACAGGACTAAATCGGAGGGCAACATCATGGAAAAGCTCTGATGATCCTTCTCCATTAAATTATTGGGAAATAGCAGAAATAAAAGAAGAAACAGAATCAGGTGCAATAAATAGTCACCATGATGAGGATGATCTGGAACTGCCCTTATTTGATATGTGCACAGTTACTTCTGCAACAAGTAATTTTTCAAGTGACAATATACTAGGGACAGGTGGTTTTGGATCAGTTTATAAGGGTATCTTGGAAAATGGACGGGAAATAGCTGTCAAGAGACTTTCACAAAATTCAAGCCAAGGACTCCAAGAGTTCAAAAATGAAGTTATGCATATTGCCAAACTTCAGCACAGAAATTTAGTGAAGCTATTAGGGTATTGCATTCAAGCAGGGGAGAGAATATTGATTTATGAATTTATGCGCAACAAAAGCTTGGACTTCTTTATATTTGATTGTGAGAAGGGAAAGCTTCTAGACTGGCCAAAGCGTTTTCTTATTATTAATGGAATTGTTAGGGGTCTTCTCTATCTTCATCAAGATTCAAGACATAGAATAGTTCATAGAGATCTTAAGGCTGGAAATATTTTGTTAGATGACGAATTGAATCCTAGAATTTCAGACTTTGGACTAGCAAGAAGCTTTGTAGGAAATGAAAACCAAGCAAATACAAGGCACATTGTTGGAACTTACGGCTATCTGTCACCGGAGTACATAGTTGATGGGATATACTCAACAAAATCTGATGTCTACAGCTTCGGAGTACTGGTGTTAGAGATAGTTAGCGGGAAGAGAAATAGAGGATTCATCCATATTGATCACAATTTTAATCTTCTTGGGCATGCATGGACGCTTTTCGTAGAAGGCAAGTGCTTACAAATAGTTGATCCATCTATCAAAGACTCAATTGATTTTCCAGAAGTCCTAAGATCAATTCATGTTGGTCTGCTATGCGTGCAACGAAATTCAGAAGATCGGCCAAGCATGTCGTGTGTGCTTACGATGCTGAGTAGTGAATGGGCATTGCCTCATCCAAAGAAGCGAGGGTTCTTTGTTGAGAGAGATGTGGTTGGTAACCATTCTTCATCAAGCAACAATAAACTATCTGTTAATAATCTGACAGTTACTCAAGTCTCTCCCCGATAG 1632 0.3964 MEAFSLLLLCFSLLNLIQFCAPRDTINTLQSISDGETLVSADETFALRFFSPGTSKNRYVGIWFNKDPTKAIVWVANRKTPLTDSSGVLKVNTTEILVLLDSNNSLIWSSNTTGSARSPVAKLLNSGNFVVQDDSNSDTEDFVWQSFAYPGDTILPGQKLGRNLATGLNRRATSWKSSDDPSPLNYWEIAEIKEETESGAINSHHDEDDLELPLFDMCTVTSATSNFSSDNILGTGGFGSVYKGILENGREIAVKRLSQNSSQGLQEFKNEVMHIAKLQHRNLVKLLGYCIQAGERILIYEFMRNKSLDFFIFDCEKGKLLDWPKRFLIINGIVRGLLYLHQDSRHRIVHRDLKAGNILLDDELNPRISDFGLARSFVGNENQANTRHIVGTYGYLSPEYIVDGIYSTKSDVYSFGVLVLEIVSGKRNRGFIHIDHNFNLLGHAWTLFVEGKCLQIVDPSIKDSIDFPEVLRSIHVGLLCVQRNSEDRPSMSCVLTMLSSEWALPHPKKRGFFVERDVVGNHSSSSNNKLSVNNLTVTQVSPR 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g01261 543 Gene3D Phosphorylase Kinase; domain 1 201 302 - -
Aip08g01261 543 SUPERFAMILY Protein kinase-like (PK-like) 212 498 IPR011009 -
Aip08g01261 543 PANTHER S-LOCUS GLYCOPROTEIN DOMAIN, PAN/APPLE DOMAIN PROTEIN-RELATED 200 538 - -
Aip08g01261 543 PANTHER S-LOCUS GLYCOPROTEIN DOMAIN, PAN/APPLE DOMAIN PROTEIN-RELATED 11 188 - -
Aip08g01261 543 Pfam D-mannose binding lectin 72 176 IPR001480 -
Aip08g01261 543 SUPERFAMILY alpha-D-mannose-specific plant lectins 72 181 IPR036426 -
Aip08g01261 543 Gene3D Transferase(Phosphotransferase) domain 1 303 506 - -
Aip08g01261 543 Gene3D - 19 148 IPR036426 -
Aip08g01261 543 CDD B_lectin 30 150 IPR001480 -
Aip08g01261 543 ProSiteProfiles Protein kinase domain profile. 227 503 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip08g01261 543 Pfam Domain of unknown function (DUF3403) 499 543 IPR021820 GO:0004674
Aip08g01261 543 ProSiteProfiles Bulb-type lectin domain profile. 23 144 IPR001480 -
Aip08g01261 543 CDD STKc_IRAK 233 498 - -
Aip08g01261 543 Pfam Protein kinase domain 229 492 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip08g01261 543 PANTHER - 200 538 - -
Aip08g01261 543 PANTHER - 11 188 - -
Aip08g01261 543 SMART blect_4 29 150 IPR001480 -
Aip08g01261 543 SMART serkin_6 227 503 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip08g01261 543 ProSitePatterns Protein kinases ATP-binding region signature. 233 255 IPR017441 GO:0005524
Aip08g01261 543 ProSitePatterns Serine/Threonine protein kinases active-site signature. 348 360 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g01261 Aip-Chr8 18755465 18757718 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g01261 192 543 Receptor kinase-like Gene Family AT4G11480 50.546 9.46e-120 365
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Aip08g01261 Pkinase 6.8e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g01261 - - adu:107462379 682.945
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g01261 08 18755465 18757718 Aip08g01261 08 18755465 18757718 ECH