Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g01247 ATGGAAAGGTTTCCTTTGTTTCTATTGTGCTTCTCATTGATGCACGATGCTGCCATTTCCAGTACAATAGAAAGCATTAGTACTACACAGTCCCTGACTGATGGTGACACCATGGTTTCAGCCGGTGGAACCTTTGCAGTTGGATTCTTAAGTATTCCAGAAGGTTCCAAGAACCGTTACCTCGGGATATGGTACAATAAAGTGCCATCTAACACAGTAGCATGGATTGCCAATAGAAACGCTCCACTTAATGACTCGTCCGGGGTCTTGAAGATCACTGCCAATGGAACTCTTGCTCTTCATACTCATAACGATACCATCATTTGGCATTCCAACTCATCAGAATTCGCGCAGCGACCGGTTGCAGTGCTTTTAGATTCAGGGAACCTGGTTGTGAAGGAAGATGGGAGCAATGATGATGATTTGAAGAGTTTCATTTGGCAGAGTTTTGATTACCCTTATGACACGCTACTGCCAGGGATGAAACTGGGAAGTGACTTAACTACAGGCCTTACAAGGTACCTAACATCACCGATTAGCTCTGATGATCCTTCTGAAGGATTTGAACCTAAAGTCCCTGAAGAATGGAATCAGACGGATTGGTCTGATGGTTGTGTTCGAATCAATAAATTGAATTGCCAGGATGATGGATTTGTACAGTTGTCTGGTGTGAAGTTACCAAACACACAAAGAGCATCAGGGTTAAATAATAGCATGAGTCTTGAGGAGTGTGCTAATTTATGCATGAAGAATTGCTCCTGCACGGCTTATGCTTCCTTGGATATCAGGAATGGAGGAAGTGGGTGTTTATTCTGGTATGATGAGCTGATAGATATTAGAGTTCTGAGTGATCCACAGCAAGATCTTTTTGTCAGAATGTCAAGGAAAGATATAGATGAAATTTTGAAGTCAAAACATAAATCCAAGAACAAGAAGGTGCTGATTATTGCTTTCAGCTCAGTCATATCGGTAGGAATTTTGATCCTATGCCTATCCTTCATCGTATATAGAAGAAAGAAGAACAAGATAAACTATAGAAGCATGAGACACAATACAGAAAGATATGCACATGCAATAGAAGACCAGGAGGAAGACCTTGATCTACCATTGTTTGATATGGCTACACTTATTTCTGCAACCAATAACTTCTCCACCAATAAAATATTAGGAAAAGGTGGTTATGGAACTGTTTATCAGGGTACACTGAAAGATGGAAGAGAAATAGCTGTTAAGAGGCTCTCAGAAAATTCTAGACAAGGTCTTCAGGAGTTCAAAAGTGAAGTGATGAATGTAGTCAAACTTCAGCACAGGAATTTGGTGAAGCTTCTAGGGTGTTGCATTCAAGCAGAAGAAAGGATGCTGATCTATGAGTTTATGCCAAATAAAAGCTTGGACTACTTCATATTTGATAAAGAGAGAAGCACGCAACTACTTTGGCCTCAGCGTTTCCTTATTATTGTTGGGATTGCACGGGGTGTTCTCTATCTCCATCAAGATTCAAGACATAGAATAGTTCACAGAGATCTCAAGGCTAGCAATGTTCTACTAGATGACGAAATGAACGCCAAAATCTCTGATTTTGGACTAGCCAGAAGCTTTAAAGGAAATGAAAATGAAGCAAACACAACAAGAGTTGTTGGAACTTATGGCTATCTATCTCCAGAGTACCTAATTGATGGAATTTTCTCAACAAAGTCTGATGTTTATAGCTTTGGTGTGCTTGTATTAGAGATAGTAAGTGGAAAAAGAAATAGAGGGTTCAGCGATAAAAATCATCGCTTTAATCTTCTCGGACATGTATGGACACTCTTCATGGATGGTAATTGTTCAGAAATAATCGATCCGTCCATCAGAAATTCGTCCGAATTATCTGGAGTCATAAGAGTAATTCATGTGGGTCTACTTTGTGTTCAACAGAATCCAGAAGACAGGCCAAGCATGGCACATGCTCTTATGATGCTGAGTAGCGAATGCACACTGCCTCAACCGAAAATGCCAGGATTCTTTACCGAGAGAGATCCTGTTGGTGACACTTCTTCATCAAGCAATACTAAACTAGTGTCATTTAATGAAGTCACTGTTACTGTGGTGCATCCACGGTAG 2103 0.4037 MERFPLFLLCFSLMHDAAISSTIESISTTQSLTDGDTMVSAGGTFAVGFLSIPEGSKNRYLGIWYNKVPSNTVAWIANRNAPLNDSSGVLKITANGTLALHTHNDTIIWHSNSSEFAQRPVAVLLDSGNLVVKEDGSNDDDLKSFIWQSFDYPYDTLLPGMKLGSDLTTGLTRYLTSPISSDDPSEGFEPKVPEEWNQTDWSDGCVRINKLNCQDDGFVQLSGVKLPNTQRASGLNNSMSLEECANLCMKNCSCTAYASLDIRNGGSGCLFWYDELIDIRVLSDPQQDLFVRMSRKDIDEILKSKHKSKNKKVLIIAFSSVISVGILILCLSFIVYRRKKNKINYRSMRHNTERYAHAIEDQEEDLDLPLFDMATLISATNNFSTNKILGKGGYGTVYQGTLKDGREIAVKRLSENSRQGLQEFKSEVMNVVKLQHRNLVKLLGCCIQAEERMLIYEFMPNKSLDYFIFDKERSTQLLWPQRFLIIVGIARGVLYLHQDSRHRIVHRDLKASNVLLDDEMNAKISDFGLARSFKGNENEANTTRVVGTYGYLSPEYLIDGIFSTKSDVYSFGVLVLEIVSGKRNRGFSDKNHRFNLLGHVWTLFMDGNCSEIIDPSIRNSSELSGVIRVIHVGLLCVQQNPEDRPSMAHALMMLSSECTLPQPKMPGFFTERDPVGDTSSSSNTKLVSFNEVTVTVVHPR 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g01247 700 Pfam PAN-like domain 213 279 IPR003609 -
Aip08g01247 700 Pfam Protein tyrosine and serine/threonine kinase 385 650 IPR001245 GO:0004672|GO:0006468
Aip08g01247 700 Gene3D Hepatocyte Growth Factor 211 292 - -
Aip08g01247 700 PIRSF SRK 2 188 IPR024171 GO:0004674
Aip08g01247 700 PIRSF SRK 185 700 IPR024171 GO:0004674
Aip08g01247 700 ProSitePatterns Protein kinases ATP-binding region signature. 389 411 IPR017441 GO:0005524
Aip08g01247 700 PANTHER - 12 187 - -
Aip08g01247 700 PANTHER - 186 697 - -
Aip08g01247 700 Gene3D Phosphorylase Kinase; domain 1 356 458 - -
Aip08g01247 700 Gene3D - 18 150 IPR036426 -
Aip08g01247 700 ProSiteProfiles Bulb-type lectin domain profile. 23 145 IPR001480 -
Aip08g01247 700 CDD STKc_IRAK 389 654 - -
Aip08g01247 700 CDD PAN_AP_plant 210 292 - -
Aip08g01247 700 SMART blect_4 29 153 IPR001480 -
Aip08g01247 700 SMART ntp_6 213 293 IPR003609 -
Aip08g01247 700 ProSitePatterns Serine/Threonine protein kinases active-site signature. 504 516 IPR008271 GO:0004672|GO:0006468
Aip08g01247 700 Gene3D Transferase(Phosphotransferase) domain 1 459 662 - -
Aip08g01247 700 CDD B_lectin 29 153 IPR001480 -
Aip08g01247 700 ProSiteProfiles PAN/Apple domain profile. 213 294 IPR003609 -
Aip08g01247 700 PANTHER S-LOCUS GLYCOPROTEIN DOMAIN, PAN/APPLE DOMAIN PROTEIN-RELATED 186 697 - -
Aip08g01247 700 PANTHER S-LOCUS GLYCOPROTEIN DOMAIN, PAN/APPLE DOMAIN PROTEIN-RELATED 12 187 - -
Aip08g01247 700 SUPERFAMILY alpha-D-mannose-specific plant lectins 73 183 IPR036426 -
Aip08g01247 700 ProSiteProfiles Protein kinase domain profile. 383 665 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip08g01247 700 SMART serkin_6 383 659 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip08g01247 700 Pfam Domain of unknown function (DUF3403) 655 700 IPR021820 GO:0004674
Aip08g01247 700 Pfam D-mannose binding lectin 72 177 IPR001480 -
Aip08g01247 700 SUPERFAMILY Protein kinase-like (PK-like) 367 654 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g01247 Aip-Chr8 18567704 18571959 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g01247 301 700 Receptor kinase-like Gene Family AT4G05200 46.394 2.29e-119 371
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Aip08g01247 PK_Tyr_Ser-Thr 8.8e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g01247 - - ahf:112769711 877.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g01247 08 18567704 18571959 Aip08g01247 08 18567704 18571959 ECH