Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g01246 ATGGAAAGGTTCATCACCTTGCTTCTGTTGTGCTTTTCATTGTTGCACGATACTGCCATTTCCATTACCATAGAAACCATTAGCACTTCACAATCCCTCACTGATGCTGACATCATGCTTTCACCTAGCAGAACCTTTGCATTGGGATTCTTCAGTAGTCCAGAAAATTCCAAAAATCGTTACCTTGGAATATGGTACAATAGAGTATCAACAACCACCGTTGTATGGGTTGCCAATAGAAACAAACCACTCTACCACTCATCCGGAGAGTTGAAGATCGCCAAAGACGGGATTCTAGAGCTTTACAACAGTAGCACCATTGCTTGGTCTTCCAACTCATCAAGATTTTCACAGAAACCCGTTATTGCGGTTCTTTTGGATTCTGGTAACTTCGTTGTGAAGGAAGCAGTCAGAAACAATGACGATTCAACAAGTTTTCTTTGGCAGAGTTTTGATTACCCTGGTGACACTTTGCTACCAGGGATGAAGCTTGGAATCGATTTAACAACCGGCATGAATAGGTACCTAACTTCGTGGACAAGCCGCGATGATCCATCTTCAGGCAACTACACATTTCAGCTTGATATCACTGGGTATCCGCGATTATGTATAAGAAATGGCGAATCCAAGGAGCATTGTGGTGGATCTTGGAATGGTGTTCGGTTTAGTGGAATTCCTCTGCTAAAACAGAATTCCATATTCAACTATTACTTTGTCTCTAACCAAGAAGAGATATATTATACATTTGAGCTTGTTAATAGCTCAGTCTATTCAAGGTTTTCGCTAACCGTGGATGGAATCATGACGCGTTATGTCTGGAATGCTAAGAATCAAAGCTGGAGCATCTATCTAGCAGTACCAAAGGACTTGTGTGATTATTATGGCAAATGCGGCGTGTATGGTAGTTGTAACATAGACAACTCCCCAGTATGTGGATGCTTGAAAGGATTTGAACCTAGGGTCCCAGAAGAATGGAATCAAGCTGATTGGTCTAATGGCTGCAACAGAACTAATTCGTTAAGCTGTCGCGGAGATGGATTCGCGAAATTTTCTAGTCTCAAGTTACCGGACACAGAGAGGACATCATGGTTAAACAAAACTCTGAGCCTTGTGGAATGTGCTGAAATCTGCATCAGAAACTGCTCTTGCACTGCTTATGCTGCATTAGATATCAGGAAAGAGGCAAGTGGATGTTTACTGTGGTATGGTGACTTAATAGATATTAGAGTACTGAATGATCCACAACAAGATATTTATGTCAGAATGTCAAAGAAAGATCTAGATGAAGATGAAAATTTGAAACACAAATCCGACATCCGAAAGCTGCAGATTATTGTTTCTAGCTCAGTCATATCTGTAGGGATTTTGATCCTCTGTCTATCCTTCACCCTGTATAGATGCAAGAAGTACAAAAAAAACTATAGAAGCATGAGAGGCAAACCAGAAACAGATGCACATGCAATACAAGAGCATCAAAAGGAGGAAGAACTAGATCTACCCTTGTTTGATTTAGCTACAGTTATTTCTGCAACCGATAACTTCTCTATCAATAACATCTTGGGAAAAGGTGGTTTTGGAACTGTTTATCAGGGTATGCTGGAAGATGGAAGAGAAATAGCTGTTAAGAGACTCTCAGAAAATACTAGACAAGGTCTTCAAGAGTTCAAAAGTGAAGTAATGCATATAGTCAAACTTCAGCATAGGAATTTGGTGAAGCTTCTAGGATGTTGCATTGAAGCAGATGAAAGGATGTTGGTGTATGAGTTTATGCCAAATAAAAGCTTGGACTACTTCATATTTGATAATGAGAGGAGCATATTATTAGATTGGCCTCAACGCTTTCTTATCATTATTGGCATTGCACGAGGTCTTCTTTATCTCCATCAAGATTCAAGACATAGAATAATTCATAGAGATCTTAAAGCTGGAAATATTTTGTTAGATAATGAAATGAATGCTAAGATTTCTGACTTTGGATTAGCCCGAAGCTTTGCAGGAAATGAAAATGAAGCAAGTACAGTAACTATTGTTGGAACTTATGGATATTTATCACCAGAGTATCTTATTGATGGAATATTCTCAACAAAATCTGATGTCTACAGTTTTGGTGTGCTACTATTAGAGATTGTTAGTGGAAAGAGAAATAGAGGATTCAGCAATAAAAATCATCGCTTTAATCTTTTAGGGCATGTGTGGACATTTTTCATGGAAGGTAACTGCATAGAAATAGTTGACACATCCATCAGAAATGCAGCCAATTTATCCGAAGTCATGAGAGCAATTCATGTGGGCCTATTATGTGTGCAACAAAGTCCAGAAGACAGGCCGAGCATGTCGTATGTGCTTATGATGCTGAGTAGTGAATGGATATTGCCTCAACCAAAAATGCCTGGCTTCTTTACCGAGAGAGATTTGGTTGGTAGCAGCACCACTTCATCAATTAATGGACTCACAATCACTCAGATGGTTCCACGGTAG 2478 0.3947 MERFITLLLLCFSLLHDTAISITIETISTSQSLTDADIMLSPSRTFALGFFSSPENSKNRYLGIWYNRVSTTTVVWVANRNKPLYHSSGELKIAKDGILELYNSSTIAWSSNSSRFSQKPVIAVLLDSGNFVVKEAVRNNDDSTSFLWQSFDYPGDTLLPGMKLGIDLTTGMNRYLTSWTSRDDPSSGNYTFQLDITGYPRLCIRNGESKEHCGGSWNGVRFSGIPLLKQNSIFNYYFVSNQEEIYYTFELVNSSVYSRFSLTVDGIMTRYVWNAKNQSWSIYLAVPKDLCDYYGKCGVYGSCNIDNSPVCGCLKGFEPRVPEEWNQADWSNGCNRTNSLSCRGDGFAKFSSLKLPDTERTSWLNKTLSLVECAEICIRNCSCTAYAALDIRKEASGCLLWYGDLIDIRVLNDPQQDIYVRMSKKDLDEDENLKHKSDIRKLQIIVSSSVISVGILILCLSFTLYRCKKYKKNYRSMRGKPETDAHAIQEHQKEEELDLPLFDLATVISATDNFSINNILGKGGFGTVYQGMLEDGREIAVKRLSENTRQGLQEFKSEVMHIVKLQHRNLVKLLGCCIEADERMLVYEFMPNKSLDYFIFDNERSILLDWPQRFLIIIGIARGLLYLHQDSRHRIIHRDLKAGNILLDNEMNAKISDFGLARSFAGNENEASTVTIVGTYGYLSPEYLIDGIFSTKSDVYSFGVLLLEIVSGKRNRGFSNKNHRFNLLGHVWTFFMEGNCIEIVDTSIRNAANLSEVMRAIHVGLLCVQQSPEDRPSMSYVLMMLSSEWILPQPKMPGFFTERDLVGSSTTSSINGLTITQMVPR 825
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g01246 825 Gene3D - 20 151 IPR036426 -
Aip08g01246 825 PIRSF SRK 1 825 IPR024171 GO:0004674
Aip08g01246 825 ProSiteProfiles PAN/Apple domain profile. 342 423 IPR003609 -
Aip08g01246 825 Pfam D-mannose binding lectin 73 179 IPR001480 -
Aip08g01246 825 CDD PAN_AP_plant 340 421 - -
Aip08g01246 825 Gene3D Transferase(Phosphotransferase) domain 1 590 790 - -
Aip08g01246 825 Pfam PAN-like domain 342 408 IPR003609 -
Aip08g01246 825 CDD STKc_IRAK 520 785 - -
Aip08g01246 825 SUPERFAMILY Protein kinase-like (PK-like) 498 785 IPR011009 -
Aip08g01246 825 PANTHER - 12 813 - -
Aip08g01246 825 Gene3D Hepatocyte Growth Factor 340 422 - -
Aip08g01246 825 SUPERFAMILY alpha-D-mannose-specific plant lectins 74 185 IPR036426 -
Aip08g01246 825 SMART blect_4 30 154 IPR001480 -
Aip08g01246 825 ProSiteProfiles Bulb-type lectin domain profile. 24 146 IPR001480 -
Aip08g01246 825 ProSitePatterns Serine/Threonine protein kinases active-site signature. 635 647 IPR008271 GO:0004672|GO:0006468
Aip08g01246 825 Pfam Protein tyrosine and serine/threonine kinase 516 783 IPR001245 GO:0004672|GO:0006468
Aip08g01246 825 CDD B_lectin 25 154 IPR001480 -
Aip08g01246 825 PANTHER S-LOCUS GLYCOPROTEIN DOMAIN, PAN/APPLE DOMAIN PROTEIN-RELATED 12 813 - -
Aip08g01246 825 SMART serkin_6 514 790 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip08g01246 825 ProSiteProfiles Protein kinase domain profile. 514 790 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip08g01246 825 SMART ntp_6 342 422 IPR003609 -
Aip08g01246 825 Pfam S-locus glycoprotein domain 215 320 IPR000858 GO:0048544
Aip08g01246 825 ProSitePatterns Protein kinases ATP-binding region signature. 520 542 IPR017441 GO:0005524
Aip08g01246 825 Gene3D Phosphorylase Kinase; domain 1 475 589 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g01246 Aip-Chr8 18536170 18540501 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g01246 468 825 Receptor kinase-like Gene Family AT4G11480 50.000 1.43e-115 363
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Aip08g01246 PK_Tyr_Ser-Thr 8.4e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g01246 - - ahf:112769704 1634.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g01246 08 18536170 18540501 Aip08g01246 08 18536170 18540501 ECH