Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g01211 ATGTCTGTGGCAGCAGCTTCTGATTCTTCTTCTTCTTCTGAGTTAAATAACAATGATAGCAGCATATGTGATTACACTAGAATGTGCGGACCAAATGGGAACTGCGACCTTGATGAGGCACAAACTTGTGTGTGCTTGGATGGTTTCACACCAAAGTCCCCAACTGATTTTGCTTACTTGAACTTTAGACAGGGATGTGTAAGAAACAAAGCTTTGAATTGTAGCACTGATGTGTTTGTTAGGCATTCTTCGTTTAAAGAACCAAGTGGTGGTTATTCACTGTCCAACCAACAGGATTGCTTGGGAAAATGCAAGAGCGATTGTTCTTGTATGGCGTATAAAGTAATTGTCGGTGGATGCAAATTGTGGAACGGTGATTTGTTTGATGTTAGGTTGCTCAAACAGGGCGGACAAGATCTTTATATTCGAATGTCAGCTTCAGAGGAACAAGGGGAATCAGAGGCAGGTGGGAAAAAACAGGGGCGAAATGAGGGAATGGTGGTAGGAATAGTTGTGGGGAGCAGTGTTGTGATTTCCATGATAATCATCGCTTCATGGTACATGTTCAGGGAAAGAACTGCTTCAAAAGCATTGGAACATGTAAGGATTAACGAGATCGTTACTCATGACACCAATGTACAAATACTACAAATGGAAGACATGGGCCTTCCTTTGTTTGATCTGTCAAGAATAATTGTGGCCACTGATAATTTCTCCCCCATCAATAAGCTTGGAGAAGGTGGTTTTGGATCTGTTTACAAGGGTATATTAAATGATGGACAACAAATTGCTGTAAAGAGGCTTTCAAGTAGTTCTGGACAAGGTCTAAATGAATTCAAAACCGAAGTAAAGCTAATAGCTAAACTTCAACACCGTAATCTTGTAAAGCTTTTTGGATGTTGCATCCAAGAGGAGGAGAAATTACTGATATATGAATACATGCCTAATAAAAGCTTGGACTATTTTATTTTTGATCAAGTGCGAAGGAGTATGTTAGATTGGTCTAAGCGCTTTAATATTATTAGCGGAATCGCTAAAGGCTTATTGTATCTTCATCAAGATTCAAGATTGAGAATTATACATAGAGATATTAAAACGAGTAATATTTTATTGGGCAGTAAGATGGAACCCAAAATATCAGACTTTGGTTTAGCTAGAAGCTTTGAAAATGGTCAAAGTAAAGGAAATACAAATAGAGTTGTTGGAACTTTTGGATATATGGCTCCAGAATATGCTGTTAATGGACACTTTTCGATAAAATCTGACGTCTTTAGCTTTGGTATTTTATTACTTGAAATTGTATCCGGGAAGAGAAATAGAAGATTATATTGTCCAAGTGACAATGATGAAAGCTTGTATGGAAACGCATGGGATTTATGGAAGCAAGGAAGGTCACTGGAGCTTGTGGATGAATGCCTCAAAGATTCATGGAATTTGAGTGAAGTACAACGTTGTATTCATATTGGCCTCCTATGTGCACAGCAAAATCCCCATGATAGGCCAATTATGTCTTATGTGGTTTTAATGTTAGGAAGTGAAATTGATTTGCCTCAACCCAAAGCTCCTAAATTTTTTATTTGTGATCCTTTTGATGGATCAAGTACCTCCATTAGTAAAAACGAATTAAGCATTACAGAGATGGAAGCTCGATAG 1653 0.3799 MSVAAASDSSSSSELNNNDSSICDYTRMCGPNGNCDLDEAQTCVCLDGFTPKSPTDFAYLNFRQGCVRNKALNCSTDVFVRHSSFKEPSGGYSLSNQQDCLGKCKSDCSCMAYKVIVGGCKLWNGDLFDVRLLKQGGQDLYIRMSASEEQGESEAGGKKQGRNEGMVVGIVVGSSVVISMIIIASWYMFRERTASKALEHVRINEIVTHDTNVQILQMEDMGLPLFDLSRIIVATDNFSPINKLGEGGFGSVYKGILNDGQQIAVKRLSSSSGQGLNEFKTEVKLIAKLQHRNLVKLFGCCIQEEEKLLIYEYMPNKSLDYFIFDQVRRSMLDWSKRFNIISGIAKGLLYLHQDSRLRIIHRDIKTSNILLGSKMEPKISDFGLARSFENGQSKGNTNRVVGTFGYMAPEYAVNGHFSIKSDVFSFGILLLEIVSGKRNRRLYCPSDNDESLYGNAWDLWKQGRSLELVDECLKDSWNLSEVQRCIHIGLLCAQQNPHDRPIMSYVVLMLGSEIDLPQPKAPKFFICDPFDGSSTSISKNELSITEMEAR 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g01211 550 SUPERFAMILY Protein kinase-like (PK-like) 223 530 IPR011009 -
Aip08g01211 550 ProSitePatterns Protein kinases ATP-binding region signature. 244 266 IPR017441 GO:0005524
Aip08g01211 550 ProSiteProfiles PAN/Apple domain profile. 74 145 IPR003609 -
Aip08g01211 550 SMART ntp_6 74 144 IPR003609 -
Aip08g01211 550 CDD STKc_IRAK 244 510 - -
Aip08g01211 550 Gene3D Transferase(Phosphotransferase) domain 1 314 518 - -
Aip08g01211 550 Gene3D Phosphorylase Kinase; domain 1 198 313 - -
Aip08g01211 550 Pfam Protein tyrosine and serine/threonine kinase 242 507 IPR001245 GO:0004672|GO:0006468
Aip08g01211 550 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 8 543 - -
Aip08g01211 550 SMART serkin_6 238 491 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip08g01211 550 ProSiteProfiles Protein kinase domain profile. 238 525 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip08g01211 550 Pfam S-locus glycoprotein domain 19 53 IPR000858 GO:0048544
Aip08g01211 550 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 8 543 - -
Aip08g01211 550 CDD PAN_AP_plant 72 143 - -
Aip08g01211 550 ProSitePatterns Serine/Threonine protein kinases active-site signature. 359 371 IPR008271 GO:0004672|GO:0006468
Aip08g01211 550 Pfam PAN-like domain 74 130 IPR003609 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g01211 Aip-Chr8 17378229 17380809 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g01211 160 525 Receptor kinase-like Gene Family AT4G23190 50.135 3.64e-126 380
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Aip08g01211 PK_Tyr_Ser-Thr 2.1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g01211 - - aip:107610641 773.081