LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aip08g01185	ATGGCTTTGAGGGCGGCAGCGGCTATAGCTGCAGCGCAACCTTCGTCGCGCGGTTTATTGCGGCTGCTTTCGAGCCGTTCTGCTTATCCGCCGTCGACTACTGCCGCAGTGTTTGCTCGACAGGCGGTGGAGCCCAAATCCTCCGTCTTCGTTTCCGGGCTTAACAAACGGACGACATCCGAACGCCTACTCCAAGAATTTTCTAAGTTTGGTGAAGTTGTTCGCACTAGGGTGATGATCGATAGAACAGGTTGTTCTAAAGGGTACGGTTTTGTACAATATGCCACTATAGAAGAGGCTGCAAAGGGCATCGAAAACATGAATGGAAAGTTTTTGGATGGTTGGGTTATATTTGTAGAGTATGCCAAATCTATCCCAGAACCTAGACAGCAATGTCCCCGGCATCTCCGGCAGTAG	417	0.5036	MALRAAAAIAAAQPSSRGLLRLLSSRSAYPPSTTAAVFARQAVEPKSSVFVSGLNKRTTSERLLQEFSKFGEVVRTRVMIDRTGCSKGYGFVQYATIEEAAKGIENMNGKFLDGWVIFVEYAKSIPEPRQQCPRHLRQ	138

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aip08g01185	138	PANTHER	TRANSFORMER-2-RELATED	1	131	-	-
	Aip08g01185	138	SUPERFAMILY	RNA-binding domain, RBD	40	133	IPR035979	GO:0003676
	Aip08g01185	138	SMART	rrm2_1	48	120	IPR003954	GO:0003676
	Aip08g01185	138	CDD	RRM_SF	49	120	-	-
	Aip08g01185	138	Gene3D	-	32	137	IPR012677	-
	Aip08g01185	138	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	47	124	IPR000504	GO:0003723
	Aip08g01185	138	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	49	114	IPR000504	GO:0003723
	Aip08g01185	138	PANTHER	GLYCINE-RICH RNA-BINDING PROTEIN 3, MITOCHONDRIAL-LIKE	1	131	-	-
	Aip08g01185	138	SMART	rrm1_1	48	120	IPR000504	GO:0003723

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aip08g01185	Aip-Chr8	16764523	16766667	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aip08g01185	31	129	Eukaryotic Initiation Factors Gene Family	AT4G34110	33.000	5.71e-07	45.8

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aip08g01185	-		-	adu:107488830	179.489

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Aip08g01185	08	16764523	16766667	Aip08g01185	08	16764523	16766667	ECH