Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g01139 ATGGATTCACAACAGCTATATAGTTTTGGTGTGACAAGTGCAGGACTACCTTATATTCCATCCTTCCCCGCAATTCCGTCGTCGCAACCCAACAGGCTTCTTGGATCCTTGAAATTTGACACTGGGAACTCGCCCAATTCCCCCTTTTCGACTCATTTTGATTCTGATACTCTTTCAGCTTTTAGTGATAGCCAGGACCAGCAGCACAGCCCTGGAGAAATCCTATCCGGCGTCAGCACCTCGTGCAACTCGCCTTTCGAAACCAATCATTACTTGCATACATCAGTCTCGTCTGCAGACAGTAATAGGGGCAGTTTTCAACTCTATTCTGCCAGGAGCTCTCTTCTGCAGAATGCAAATTGTAACCAGAAAATTCGAAACGTGTTGCTGGAATTAGAATCTGCTCTGATGGCCCCGGACGAAGAAGAAGTCACTACATCGAATGCTTCGATGGTTGAGAGCAGTGGACCAACAACATCTGGCCAAAGAAACAGGTCATGGAGTCATGATCACTACGGCTCGCAATTTGTTCAGAGCCAGGGATCATATGTAACTGGAAGCAGGCAAACAAGTGAGTTTGAACATGTTATGAAGCGCCAGAAATCGATAGTGGAAGCATCATCGCCCCCAGGTTTCCCATCGGGAAATTTGAAACAATTGCTGGTTGCTTGTGCAGAGGCCATGGCTGATGGCAACATGAATGATTTTGATCAATTGATATCAAAGGCTAAAGGTGCTGTATCTATAACCGGTGAGCCATTGCAACGGCTCGGTGCTTACATGGTAGAAGGGCTTGTTGCAAGGAAGGAAGCATCAGGGACCGGCATCTATCGCGCCCTTAAGTGCAGAGAGCCGGAAGGCAAAGACTTACTTTCATACATGCAAATGCTGTTTGAAATCTGTCCCTATCTGAAATTTGGTTACATGGCAGCCAATGGAGCCATAGCCGAAGCATGCCGAGATGAGGATCACATACACATAATAGACTTTCAGATTGCTCAAGGAACTCAATGGATGACTCTCCTCCAAGCTCTGGCGGCAAGACCTCGTGGACCGCCCCATGTGAGGATCACAGGGATTGATGACCCTGTTTCCAGGTATGCTCGTGGCGAAGGACTAGAGGTAGTTGGGAAAAGGCTGGCCATGATGTCTGAGAAATTTCGCATCCCGGTGGAGTTTCATGGAGTGCCGGTTTATGCTCCGGATGTGACCAGAGAGATGTTAAATATCAGGTCCGGAGAGGCTTTGGCTGTGAACTTTCCTTTGCAACTTCACCATACCGCCGATGAGAGTGTTGATGTGAATAACCCAAGAGATGGAATCCTTAGACTGGTGAAGTCGCTTTCGCCCAAGGTGGTAACATTGGTGGAGCAGGAATCAAACACAAACACAACACCATTTTTCAACAGATTCATGGAGACCTTGGACTACTACTTGGCGATCTTCGAGTCTATTGATGTCACACTCCCAAGAAACAGCAAGGAGAGGATCAATGTGGAGCAGCATTGTCTGGCCAGGGACATTGTCAACATTGTGGCTTGTGAAGGGAAGGAGAGGGTCGAGCGCCACGAACTCTTCGGCAAGTGGAAGTCGAGGTTGACTATGGCCGGATTCCGGCAGTGTCCTTTGAGCTCCTATGTGAATTCTGTTATAAGAGGCCTTCTCAGGTGCTATTCTGAGCACTATTCCTTGGTGGAGAAGGACGGAGCCATGTTGTTGGCCTGGAAGAACAGAAATTTGATATCAGCTTCAGCATGGCACTGA 1764 0.4796 MDSQQLYSFGVTSAGLPYIPSFPAIPSSQPNRLLGSLKFDTGNSPNSPFSTHFDSDTLSAFSDSQDQQHSPGEILSGVSTSCNSPFETNHYLHTSVSSADSNRGSFQLYSARSSLLQNANCNQKIRNVLLELESALMAPDEEEVTTSNASMVESSGPTTSGQRNRSWSHDHYGSQFVQSQGSYVTGSRQTSEFEHVMKRQKSIVEASSPPGFPSGNLKQLLVACAEAMADGNMNDFDQLISKAKGAVSITGEPLQRLGAYMVEGLVARKEASGTGIYRALKCREPEGKDLLSYMQMLFEICPYLKFGYMAANGAIAEACRDEDHIHIIDFQIAQGTQWMTLLQALAARPRGPPHVRITGIDDPVSRYARGEGLEVVGKRLAMMSEKFRIPVEFHGVPVYAPDVTREMLNIRSGEALAVNFPLQLHHTADESVDVNNPRDGILRLVKSLSPKVVTLVEQESNTNTTPFFNRFMETLDYYLAIFESIDVTLPRNSKERINVEQHCLARDIVNIVACEGKERVERHELFGKWKSRLTMAGFRQCPLSSYVNSVIRGLLRCYSEHYSLVEKDGAMLLAWKNRNLISASAWH 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g01139 587 Pfam GRAS domain family 217 586 IPR005202 -
Aip08g01139 587 MobiDBLite consensus disorder prediction 45 79 - -
Aip08g01139 587 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 22 587 - -
Aip08g01139 587 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 22 587 IPR005202 -
Aip08g01139 587 MobiDBLite consensus disorder prediction 141 169 - -
Aip08g01139 587 MobiDBLite consensus disorder prediction 140 169 - -
Aip08g01139 587 ProSiteProfiles GRAS family profile. 208 587 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g01139 Aip-Chr8 15422416 15425689 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g01139 215 586 GRAS Transcription Factor Family AT1G50600 61.559 1.51e-171 495
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Aip08g01139 GRAS 1.9e-128 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g01139 - - adu:107462432 1172.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g01139 08 15422416 15425689 Aip08g01139 08 15422416 15425689 ECH
Aip08g01139 08 15422416 15425689 Aip03g01952 03 26715069 26718529 PCT