Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g01036 ATGATTGTTGAGTTATTGTTGTTGTTGTATTATGCAGATAATGCTGGGACAAACAAAGCGGCATCTAGTAGCACGTCATTGAACACCAAGAGGCTTGATGATGATACAGAGAATCTAGCTCATGAACGCGTGCCGACTGAACTCAAGAAGGCTCTCATGCAAGCAAGGATGGACAAGAAACTCACTCAAGCACAGCTTGCTCAGATTATCAATGAGAAGCCTCAAGTGATCCAGGAGTACGAGTCAGGAAAAGCGATTCCAAACCAGCAGATAATTGGCAAGTTGGAGAGGGCCCTTGGTGCCAAACTGCGAGGCAAGAAATAA 324 0.4506 MIVELLLLLYYADNAGTNKAASSSTSLNTKRLDDDTENLAHERVPTELKKALMQARMDKKLTQAQLAQIINEKPQVIQEYESGKAIPNQQIIGKLERALGAKLRGKK 107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g01036 107 SMART mbf_short4 51 106 IPR001387 -
Aip08g01036 107 MobiDBLite consensus disorder prediction 18 40 - -
Aip08g01036 107 Gene3D - 36 107 IPR010982 GO:0003677
Aip08g01036 107 SUPERFAMILY lambda repressor-like DNA-binding domains 46 103 IPR010982 GO:0003677
Aip08g01036 107 ProSiteProfiles Cro/C1-type HTH domain profile. 52 106 IPR001387 -
Aip08g01036 107 PANTHER ENDOTHELIAL DIFFERENTIATION-RELATED FACTOR 1 MULTIPROTEIN BRIDGING FACTOR 1 13 107 - -
Aip08g01036 107 CDD HTH_XRE 50 100 IPR001387 -
Aip08g01036 107 Pfam Multiprotein bridging factor 1 14 44 IPR013729 -
Aip08g01036 107 Pfam Helix-turn-helix 52 102 IPR001387 -
Aip08g01036 107 PANTHER ENDOTHELIAL DIFFERENTIATION-RELATED FACTOR 1 13 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g01036 Aip-Chr8 13211880 13213342 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR MBF1 Aip08g01036 HTH_3 3.5e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g01036 K03627 - gmx:100500420 179.874
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g01036 08 13211880 13213342 Aip08g01036 08 13211880 13213342 ECH