Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g01033 ATGGGTGAGAGAATTATTGAAGGCAAAGAAGGGTCTTGCTCTCTAATTACTAGTCCTAATAATGGGAGTAGAAAACGTTCATTCATAGACTTGAATGAAGAAGCTGGTGATCATGAGAACAGAAGCAATAACAATGATAATGAGATATGTTCATCTTCATGGCAAGAAGGGAATTTGAGTAGCAGCAACAACAACAACAACACCACATCATCAAGCGAAGAAGAAGAAGAAGAAGATGAAGGAGGGAATAATAATAAGAATAATAAAGGAAGAACAACAAGTATGGTTAGACAATATGTGAGGTCAAAGATGCCAAGGCTTCGTTGGACTCCTGATCTCCATCTTGCTTTTGTTCAAGCTGTTAATCGCCTTGGTGGACAAGAAAGAGCAACACCAAAGTTGGTTCTTCAGTTGATGAATGTGAGAGGTCTTAGCATTGCACATGTAAAGAGTCATTTGCAGATGTATCGAAGTAAGAAGCTTGATGAGTCTGGTCAAGTTTTATCCCAAAGTAGGGCAATGCAACAAGGAAGGCATCAAATTTTGGAGATGTATCAAAGATTAAATGTACAAGCACACTTTGGGGTTGATAACATTATTAACAGGAGTAGTAGTTATGTACCATCATCATCTCTCCTCATTAAACAACAACCATATAACATTAAACTTCATCATCATGCCTCTTCAAGATTTCACCCAACTGGGATTTTCAATAGTCACATGATGACAAGATCAAGTTCATTGGAGGACAAAGATTCAAGGTTATATGAAGCAAGCTCACATCTATTTGATGTAAGGGATGCAATAATAAGAAGAAATAATAGTAGTAATAGTAATGGAGCTTTTAGGTCTTGCCAAATACTTGAACAAGTGAAGTGGCCTCCTCCTCCTCCTCCTAGAGGAACCTTAAAGGATAAGAATGATAATGGATCACAAGAAAGTGAGAAACATGAAACTTTAGTAGGCATTTCAATGGATGACAATACTAGATTTGGTGCACAACCTTCATCACAACAATGGAGCACTACTACCTTGGCTGATTATCAATGTCATCATCATCAAAGAAGTTCTTGCAGTGTTGCCTTCCCTGCTGGCCATCATGCCAAGTTAGATACTCAGGTACATGATCTAAAAAACCAAATGTATGATGATGAGAAGAAAGGGTCGTCATCATCAAGTTTCCTAGAGCTTAAGCTAAGCCAAGACTCATTAGAAAACCCACAAAGTGAACAAGAAATCGATACTAAACTTTCTCTTTCGTTGTTCTCTTCATCATCAAATAATTCAAGTGATTACAAACACAAAGAGAAGAAAACCCAGGTTGAGCGTTTATGTTTACAACAAAATTTCACACAAAGGAGTCTATTGGGCTGA 1374 0.3755 MGERIIEGKEGSCSLITSPNNGSRKRSFIDLNEEAGDHENRSNNNDNEICSSSWQEGNLSSSNNNNNTTSSSEEEEEEDEGGNNNKNNKGRTTSMVRQYVRSKMPRLRWTPDLHLAFVQAVNRLGGQERATPKLVLQLMNVRGLSIAHVKSHLQMYRSKKLDESGQVLSQSRAMQQGRHQILEMYQRLNVQAHFGVDNIINRSSSYVPSSSLLIKQQPYNIKLHHHASSRFHPTGIFNSHMMTRSSSLEDKDSRLYEASSHLFDVRDAIIRRNNSSNSNGAFRSCQILEQVKWPPPPPPRGTLKDKNDNGSQESEKHETLVGISMDDNTRFGAQPSSQQWSTTTLADYQCHHHQRSSCSVAFPAGHHAKLDTQVHDLKNQMYDDEKKGSSSSSFLELKLSQDSLENPQSEQEIDTKLSLSLFSSSSNNSSDYKHKEKKTQVERLCLQQNFTQRSLLG 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g01033 457 SUPERFAMILY Homeodomain-like 103 159 IPR009057 -
Aip08g01033 457 MobiDBLite consensus disorder prediction 1 94 - -
Aip08g01033 457 MobiDBLite consensus disorder prediction 289 317 - -
Aip08g01033 457 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 47 441 IPR044848 GO:0003700
Aip08g01033 457 MobiDBLite consensus disorder prediction 45 70 - -
Aip08g01033 457 Gene3D - 104 161 - -
Aip08g01033 457 PANTHER MYB-LIKE HTH TRANSCRIPTIONAL REGULATOR FAMILY PROTEIN 47 441 - -
Aip08g01033 457 Pfam Myb-like DNA-binding domain 107 157 IPR001005 -
Aip08g01033 457 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 101 161 IPR017930 -
Aip08g01033 457 MobiDBLite consensus disorder prediction 27 44 - -
Aip08g01033 457 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 105 160 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g01033 Aip-Chr8 13155083 13159167 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g01033 73 164 G2-like Transcription Factor Family AT2G42660 65.217 2.01e-34 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Aip08g01033 Myb_DNA-binding 2.9e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g01033 - - aip:107612165 823.928
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g01033 08 13155083 13159167 Aip08g01033 08 13155083 13159167 ECH