Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g01018 ATGAGTACAAAATCTGATTCAGGCAATGTATTGAATAATTCTGATGCAATTGTGATCTCTGGGAAGATCATGGTTGCAGTAGTGGTATTGCTGTCATTGGTGTTTGTTTTTGTCTTTATGCTTCATCTCTATTCCAAGTTTTCAATGTGGCGTGTTCAGCAAGAAACCTCCATTCCTTCACCACAAATCCGCCGTCACCGCCGCCACCGCCGCCATCGCCACCTTGTATTCGCCTCTGCCGAAGACGCTATCCTCCATGGAACTCAAAATGTTGGGCTTGACCCTTCAATTCTTAAGTCCATACCTGTGTTGGTGTTCCAACCCCATGAATTCAAAGAGGATTTAGAATGTGCTGTTTGCATATCTGAGCTTGTTGAAGGTGAAAAGTTTAGAGCTTTGCCACGTTGCAATCATGGGTTCCATGTTGATTGCATTGACATGTGGTTCCAATCACATTCTACTTGTCCCCTTTGTAGGACACTAGTTACTGGAAAACTCTCTAAGCTAAATAATAGCACTCCAAGTGTTCGAGAGAATGTCACAGAGAACAGTGAGTCATCATCAGAGGCTGAAAACTCTGCTGATGTGAATACCAATGATGAGTCTTCAAATTTTCCCACACATGTGTTGGTTTGGGGTGATCAAACACAATTTTCACACACTACTGAGGATCCACATTGCTCATCATCATCTGGTTCATGTTCTTCAAGCAGTGAGAGTGGAAGTGATAGTTGCACTAGTAGCAGCAGCAATGGAAGAAACAATAATGGAGTGTTGGTGATTGATATACCAAATGATGAGGTCATTCCTGAAGATGATGATGAGATGAAATCATCATCACCAATGGTAGCAAGATTGAGGTCAATCAAGAGGCTTCTAAGTAGGGACAAAAAGTCAACTAGTCCTTGTATTCCCAATTCTTTTGATGTGGAACAAGCATAG 942 0.4204 MSTKSDSGNVLNNSDAIVISGKIMVAVVVLLSLVFVFVFMLHLYSKFSMWRVQQETSIPSPQIRRHRRHRRHRHLVFASAEDAILHGTQNVGLDPSILKSIPVLVFQPHEFKEDLECAVCISELVEGEKFRALPRCNHGFHVDCIDMWFQSHSTCPLCRTLVTGKLSKLNNSTPSVRENVTENSESSSEAENSADVNTNDESSNFPTHVLVWGDQTQFSHTTEDPHCSSSSGSCSSSSESGSDSCTSSSSNGRNNNGVLVIDIPNDEVIPEDDDEMKSSSPMVARLRSIKRLLSRDKKSTSPCIPNSFDVEQA 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g01018 313 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 81 163 IPR013083 -
Aip08g01018 313 SMART ring_2 117 158 IPR001841 -
Aip08g01018 313 PANTHER RING-H2 FINGER PROTEIN ATL3 5 308 - -
Aip08g01018 313 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 5 308 IPR044675 -
Aip08g01018 313 MobiDBLite consensus disorder prediction 221 258 - -
Aip08g01018 313 MobiDBLite consensus disorder prediction 221 259 - -
Aip08g01018 313 Pfam Ring finger domain 116 159 IPR001841 -
Aip08g01018 313 CDD RING-H2_EL5_like 116 159 - -
Aip08g01018 313 SUPERFAMILY RING/U-box 97 166 - -
Aip08g01018 313 MobiDBLite consensus disorder prediction 169 206 - -
Aip08g01018 313 ProSiteProfiles Zinc finger RING-type profile. 117 159 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g01018 Aip-Chr8 12447284 12448225 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g01018 6 297 C3H Transcription Factor Family AT1G53820 39.482 6.09e-57 184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g01018 - - gmx:100775523 253.447