Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g00982 ATGAGTGGTTACGATGTTGATGGCCATAGAAACCATGACAACTACCCATCATCATCGGATCGAAGCTACTCGAACAAAAAAATCTTGGTGATGGCCGTAGCTTCCTTAACAATGGTCATCATCGTGGTCTTGGCCCTTCACATCTACGCAAGGGTGGTTCTGAGACGCCAAGCTCGAAGAAGATTCGCCATTCACCAACTCAGCCTCACCGTACAAGCCCAAGCCCAAGCCCAAGCCCACGAATACAACACAGGCCTGGACCCTAACGTCATAGCCTCTCTCCCCACCTTCATCTACAAACGAAAAAAGAGAGAAGAAGATGATGAAGATGGCGAGTGTGCTGTGTGTTTGAGTGGTGTAGAAGATGAACAAGAGGTGAGGTTGCTGCCGAATTGCAAGCACAGTTTCCATGTTGCTTGCATAGATACATGGCTGGCTTCTCATTCCACGTGTCCAATTTGTAGAACCAAGGCTGAACCAATCATAGGCCTTCAACTTCAACCTCACCCTCGTGAGCCTCCTATTCTTGTTCATGATGATGCTTCAACTTTTGAAGCTACTTCTGATAATAACAACAATGCTGCTATTGTGGGTAAGAACATTACTGGTTCTTCTGTTTCAAGATTCAGCAGCTCCTTTAGAAGGATACTAAGTAGGGATAGATCTTCTAGCACAAGAATTCAACCTTCCATAATTACTCATCTTGATGATCATGATTTAGAGAGCCAGTAA 732 0.4495 MSGYDVDGHRNHDNYPSSSDRSYSNKKILVMAVASLTMVIIVVLALHIYARVVLRRQARRRFAIHQLSLTVQAQAQAQAHEYNTGLDPNVIASLPTFIYKRKKREEDDEDGECAVCLSGVEDEQEVRLLPNCKHSFHVACIDTWLASHSTCPICRTKAEPIIGLQLQPHPREPPILVHDDASTFEATSDNNNNAAIVGKNITGSSVSRFSSSFRRILSRDRSSSTRIQPSIITHLDDHDLESQ 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g00982 243 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 71 161 IPR013083 -
Aip08g00982 243 ProSiteProfiles Zinc finger RING-type profile. 113 155 IPR001841 -
Aip08g00982 243 CDD RING-H2_PA-TM-RING 112 155 - -
Aip08g00982 243 SUPERFAMILY RING/U-box 91 164 - -
Aip08g00982 243 Pfam Ring finger domain 112 155 IPR001841 -
Aip08g00982 243 SMART ring_2 113 154 IPR001841 -
Aip08g00982 243 MobiDBLite consensus disorder prediction 1 16 - -
Aip08g00982 243 MobiDBLite consensus disorder prediction 1 22 - -
Aip08g00982 243 PANTHER RING-H2 FINGER PROTEIN ATL40-LIKE 24 242 - -
Aip08g00982 243 PANTHER RING FINGER DOMAIN-CONTAINING 24 242 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g00982 Aip-Chr8 11480712 11481626 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g00982 1 224 C3H Transcription Factor Family AT2G42360 41.736 2.90e-44 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g00982 K19038 - gmx:100780265 189.889
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g00982 08 11480712 11481626 Aip08g00982 08 11480712 11481626 ECH